Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 410 / 8e-129 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G61610 374 / 3e-115 S-locus lectin protein kinase family protein (.1) AT1G65800 369 / 1e-113 ARK2 receptor kinase 2 (.1) AT4G21380 369 / 2e-113 ARK3 receptor kinase 3 (.1) AT4G23180 363 / 4e-113 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21390 367 / 1e-112 B120 S-locus lectin protein kinase family protein (.1) AT4G11530 362 / 1e-112 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23200 360 / 2e-112 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23230 353 / 1e-111 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT1G11340 362 / 2e-110 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025774 [exp] 643 / 0 AT3G16030 390 / 2e-123 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10003156 [exp] 523 / 3e-172 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10023391 [exp] 383 / 2e-115 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033741 [exp] 369 / 6e-114 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 368 / 3e-113 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033743 [exp] 367 / 5e-113 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10006742 [exp] 370 / 2e-111 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025891 [exp] 363 / 3e-111 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10020080 [exp] 363 / 4e-111 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036466 [exp] 389 / 4e-127 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 389 / 6e-127 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G036600 [exp] 388 / 6e-121 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G437950 [exp] 372 / 1e-120 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 382 / 9e-119 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 382 / 1e-118 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 370 / 4e-118 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.004G023550 [exp] 374 / 2e-117 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G036100 [exp] 378 / 3e-117 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 372 / 3e-117 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10025784 pacid=23177547 polypeptide=Lus10025784 locus=Lus10025784.g ID=Lus10025784.BGIv1.0 annot-version=v1.0 ATGCTCTTACCTAAAATTATATCAGTTCCTGGTTCCTCCTCAGCAGAGGAAACTAGCAAACCCTTCAGAGTAAGTAATCTGATCATCATTGCTGACTTGA GAGGTCATGAAGCTACAGAAACATGGAATGATGGAGAATCTGAAGCTGGTGACAATGGCGAATCTCGCCATGTGGCTTGTTCAGATGATGGTGATGCTGT TGATGTTGGTTTGGACCTCTCAGTAGAGGAAGCAAAAGGTTTTGATGGGGTGCTGAAGCAGTCAACCCCCCTGGAAAATGAAGTCTTAAGTGGATCAACA GATTTCACAGAGGAAAGGGAAAAAATCACATCACCAGTAATGGCCATTACCAAAGTAGGAGATCCATTCATCTTGTCTACCAGCTGCTTCTTCTTCATCA CTTTTGTGGCACTGGAACTATGTCCCCTGTTCTCAAACTGTGAAAGAGACACACTTTTACAAGGGCAAGAGCTGAAAGATGGGTACCACTTGGTTTCTGC GTTTGGAGTTTTTGTTTTGGGATTCTTCACCGCTCCAAATTCGCACCACCGCTACCTTGGAATCTGGTATAGAAATCCAGAGAATAACAGAGTCATCGGC CGTAATCAAAGATCTTACTACTCCATAACCCGCAAAATACGGCCGGTCTGGGTGGGTAACAGAGACACCCCACTGGACGACAAAACAGGGTATCTGGTGA TTGGAAGCGACGGGAATTTGAGGGTCGTAAATGGGGGAGGCGATCGAGTTGCTGAAGTGAGTACAGCGGTGGTTTCAGGCCCGACGACTGCCGTTTTGAT GGATACTGGAAATTTGGTGTTGAAGGAACTGAATCCCAACGGGACAGTGAAGCGCCAAGTGTGGCAGAGCTTCGATTACCCAACAAATACCTTACTCCCA GGTATGAGAATTGGGGCCAATCTACGAACTGGGCATGTTTGGTCTCTGAAACCATGGCCCGGTTCGAGTAGCAAATTCAGTTTCGGGTTAGACCCAAAGC GGACGAGTGAAATGGTGATTTGGTGGGAAGGACAGGTGTATTGGAGAAGTGGTGCATGGTTGAATCAGACCTTCAGGGGTTTAAATTTCACCTTTGAATC GAGCAATAATGGGGAAGAGAGGTATATGAATATGATTTACAGTGCCAAAGGGGGAGACCTTGAACAAGGTGACGGTAGTTTTCCGGGGATAACCATTACT AGCGATGGTGCTCTTGTTGGTCAAGATTATCTTCGTGAAGATGTATATCAATATTTTTATGTAGATCAGTATAAATACGTAGACTGCGGCAGGAACGTGG ATGTTGGATGTTTTGGGGATGATGACATTGATACGCCTATTTGTCTTGGGTATAACGATTACAATTACTACATCGATTATGATGGAGGAAAAGAACAAGT GTACGAGGAAATGAGGAGCAGGAAGGTGAGCTTACAGTTACAGAGTGGATGCCGCAGTAGCAATTGCTCCTCCGCCACAAACAACAACTGCAGTTGCGTA TATTATGCGACACAGAATTCGGATGGGTCTGGCTGCCAGATGGGAAGGCGGATTATATACTCGACAGGAGTAGTTGTTCCATCGACTATCCTGCTATTGT TCTTCTACCTTGGTTGGAGACGGCACAATCATCTATCAACAACCATCAGGGGCGTCGTAACAGCAAGTGCCCGCCATATATGGAAGTCGTGCCGATCATT GCTGGCAATGTGGAAGAAATACATCCTGCTTCGGTTAGCGATGACCATTGCAGATGCCGAGCAAGAGATATTATTACATGAGCTTGGCATGGGTAGTAGT AGTCGTCGTCATCATGAGGCAAACGCCAACGATTTTCAGTTATTCAGTTTTGAAACTATAGCATCTGCTACGAACAAATTTCACCCTTCAAATAAGCTCG GACAGGGTGGCTTTGGACCCGTTTATAAGGGGAAGCTGGCAAGCGGGTTAGAAGTAGCAATCAAAAGACTTGCAGCCAGTTCAAAACAGGGGATAGTTGA GTTCAAAAATGAAGTAAGACTTATAGCCAAACTGCAGCATGACAATTTGGTCAGGCTAGTTGGTTGTTGCATTGACAAGGGAGAGAAAATTCTGGTCTAC GAGTATTTGCCCAACAAAAGTCTTGATTTCTCTCTTTTCGCTCCCACAAACCAGAACAGGCTAGATTGGAAGAAAAGGTTTGACATCATTCAAGGGATAG CTCAAGGACTTGTTTATTTGCACAAATATTCAAGGCTGAAAATCGTCCACAGAGACCTCAAGGCTAGCAACATCTTACTCGACAGTGAGATGAAGGCCAA GATTTCCGATTTTGGGTTGGCCAAGATATTCCATGCCAATGAATCCAGAGCTATCACCGCAAGAGTTGCTGGAACTTTCGGCTACATGTCTCCCGAGTAC GCCCTGGAGGGAATTTTCTCAACCAGATCTGATGTGTTCAGCTTCGGAGTTCTGTTGCTGGAAATCGTTAGTGGGAAGAGGAACAATCACTTCCGTCGCG ATGAAGGAGGCCCAAGCAGTCTGGTTACATGGACTTGGGAGCTATGGAGACAAGGAAGGGGATGCGAATTGGTGGATTCTGGAATGGATGATAGAAGCAA TGAGTACTGCGAGAACGAAGCGCTAAAGTGCATCCATATAGGTCTGTTATGTGTGCAAGAGAAACCACGGGACAGACCCTCTATGTTAGAAATCACCTCC ATGCTGTATAACAACAATGAAACTGCACAATTGCCTTCCCCAAATCAGCCAGCATTTTACTACAGGGTGAACTTGCATGATGCTGAAGCTCAGATTATTG AAGAGCCAGAGGCTGAGGGGAATCATCATACACTGAACCAGGTAACCATCACAGAAATTGATGGCAGGTAG
AA sequence Show only first row Show all	>Lus10025784 pacid=23177547 polypeptide=Lus10025784 locus=Lus10025784.g ID=Lus10025784.BGIv1.0 annot-version=v1.0 MLLPKIISVPGSSSAEETSKPFRVSNLIIIADLRGHEATETWNDGESEAGDNGESRHVACSDDGDAVDVGLDLSVEEAKGFDGVLKQSTPLENEVLSGST DFTEEREKITSPVMAITKVGDPFILSTSCFFFITFVALELCPLFSNCERDTLLQGQELKDGYHLVSAFGVFVLGFFTAPNSHHRYLGIWYRNPENNRVIG RNQRSYYSITRKIRPVWVGNRDTPLDDKTGYLVIGSDGNLRVVNGGGDRVAEVSTAVVSGPTTAVLMDTGNLVLKELNPNGTVKRQVWQSFDYPTNTLLP GMRIGANLRTGHVWSLKPWPGSSSKFSFGLDPKRTSEMVIWWEGQVYWRSGAWLNQTFRGLNFTFESSNNGEERYMNMIYSAKGGDLEQGDGSFPGITIT SDGALVGQDYLREDVYQYFYVDQYKYVDCGRNVDVGCFGDDDIDTPICLGYNDYNYYIDYDGGKEQVYEEMRSRKVSLQLQSGCRSSNCSSATNNNCSCV YYATQNSDGSGCQMGRRIIYSTGVVVPSTILLLFFYLGWRRHNHLSTTIRGVVTASARHIWKSCRSLLAMWKKYILLRLAMTIADAEQEILLHELGMGSS SRRHHEANANDFQLFSFETIASATNKFHPSNKLGQGGFGPVYKGKLASGLEVAIKRLAASSKQGIVEFKNEVRLIAKLQHDNLVRLVGCCIDKGEKILVY EYLPNKSLDFSLFAPTNQNRLDWKKRFDIIQGIAQGLVYLHKYSRLKIVHRDLKASNILLDSEMKAKISDFGLAKIFHANESRAITARVAGTFGYMSPEY ALEGIFSTRSDVFSFGVLLLEIVSGKRNNHFRRDEGGPSSLVTWTWELWRQGRGCELVDSGMDDRSNEYCENEALKCIHIGLLCVQEKPRDRPSMLEITS MLYNNNETAQLPSPNQPAFYYRVNLHDAEAQIIEEPEAEGNHHTLNQVTITEIDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10004283 [exp]	2.0	0.7850
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	3.2	0.8095
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021871 [exp]	4.0	0.7391
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	16.1	0.7336
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	23.9	0.7818
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	26.1	0.7588
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	28.1	0.7086
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	29.3	0.7203
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	30.0	0.7262
					Lus10025850 [exp]	30.2	0.6916

Compare expression of checked genes

Lus10025784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.