Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15240 860 / 0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) AT2G15900 180 / 5e-46 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035877 [exp] 1878 / 0 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10012042 [exp] 207 / 6e-58 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10027939 [exp] 211 / 1e-55 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 202 / 2e-53 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 160 / 7e-43 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183100 [exp] 1166 / 0 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.003G053200 [exp] 1143 / 0 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.004G146600 [exp] 273 / 2e-76 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.009G108300 [exp] 271 / 1e-75 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [flax] [poplar] PXA PXA domain PF00787 [flax] [poplar] PX PX domain PF08628 [flax] [poplar] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Lus10025785 pacid=23177532 polypeptide=Lus10025785 locus=Lus10025785.g ID=Lus10025785.BGIv1.0 annot-version=v1.0 ATGAAGAGAAAAACTGCAACCTATGTTAGCAAACCCTTGCCGCCAAGCGCAACACCACAGGATAAACCTCACTATGCAAGGAGTATTCAGAAGTCAATAT GGAGGAAGAAAGTAAACTCTCCGGCTGTTGAGGATGCAATAAATAACTTTACGAAGCATCTTGTGTCCGAGTGGGTTACAGATCTATGGTATGGTCGCTT GACACCTGATAAACAGGGACCAGAAGAACTGGTAGAGATAATGAATGGAGTCCTCGGAGAATTCTCCGCTCGTTTGAGAGATATAAATCTACTTGATCTC TTAACAAGGGATCTCATTAACCTTCTCTGCTCCCACCTGGTGCTTTTCCGATCAAGTCAAGCAAAGATTGAAAAGAAACAGTCCGATTTGCTGTCCATTG AGCAGCGAGACAGAGAAATTAAACGAGTACTTGCTAACGAGAACAAACTGCACCCTGCTTTATTTTCTGCCGAAGCTGAACACAAGGTCTTGCAGCATCT GATGGAGGGATTAATTTCGTTTACATTTAGGCCAGAAGATCGAAAATGCTCTTTTTTTGGTTATCTTGCAAGGGAGCTTCTTGCTTGTGCGGTGATGCGA CCAGTCTTAAACTTGGCTTCTCCAAGGTTTCTTAATGAAAGGATTGAGATTTTGGTAAAGTCCAAGAGTAAGAGGGGACTAGCTTCGGCAGATGGAACAT CCCTGTCGAAACCAAACGAGAATTTGAGGACCTATGATCAGTCTCCTAGATTCTTAGATCCTACTGGTACTGGTGTTGAACTTGTACAGTTGAAAAATGA TGCCTCTAAAAATCGGAACGGTACACCTGAAACAGATAATACAAATGCCATCCGTATTTCGAAAGATCCTTTACTTTCTATTGACACTCGGTCTACACGT TCCTGGAGCTCTTTGCCTTCGAACTCTCAAGTTAGTAATCTGGCAGGGGGTCAACAAAATCCCCCAGGAGAACAATGGGGGGACATGTTGGATGTTATTT CAAAGAGAAAAACTGCAGCTCTTGCTCCAGAAAATTTTGAGAATATGTGGACAAAAGGGATGAATTACAATAGAAATGGAGGTGGAAATGGGTTGATAGA ACAAGTACGACATACGTCTTCATCTAGTAAGACAATTGCAGGTTCGAAAAACAATTTTGAAGGCCAGAATAAGGATGGTATGACCTATCTTGATTCTCGT CTTTCTTCCAATACTGTTAAGTCTTTAGGATATAGTCAGCCAAGAGTACCAAACCATGTCAATCTTATAACTGAGAGCAGATTAAATTCTTTAATGCACA CTTCTTACTTAGATGATGGTCAGCAGAGACTGATGAGTGAGGATGGAGACGTATCAGATTCTAGTAGTGCCAGCCATCATATATATGACGACGATGAAGA AGAAGAAGAAGATGCAATTGATATCACTGGCCTTCATTCTCCCGGAACTAAAGTTTGGGATGGAAAAAGTAACAGAAATATGCCTGTTTCCCACATTCAT CATCCGCTTGAGAATCCAAAGGGCCGTGGTGTACAGAGGCCTAGCAAAAAGCAAACTCGTCCTCAAAGACTATCTGGACGGCATACTGGCAAGAAAAGGT CAAGATCAAGTAACCCGGGCATACATGTTTGGCAAGAGGTTGAGAGAACTAGTTTCCTATCTGGTGATGGGCAGGATGTACTTAGTGCTAAAGGATGCAC TAAAACTGATGATTCTACAGATGATTCGGAGGTTGAAAGTCTTGGTAGGCTTTCCAGTGGAACAGCTGCTTGTTCATCCAGAATCTCGCTTCCTATTGCC GAAGTTCATACCCCTTCTGATATTTCTGCGAAAACGATGATGTTAGACTCCTTCTATAAGTTGAAATGCGAGGTGCTGGGTGCAAATATTGTAAAGGGTG ACTCTACGACATTTGCTGTATATTCCATATCGGTAACAGATGTGAATGGTAACAGTTGGTCTATCAAAAGAAGGTTTCGACATTTTGAAGAGTTGCATCG ACGTCTAAAAGAGTACCCCGAATATAGCCTTCATTTACCTCCAAAGCATTTTCTCTCAACAGGTTTAGATATGTCTGTCATTCAAGAACGCTGTAAACTG CTTGACAGATATCTCAAGAAGCTGCTGCAAATTCCAAGAGTATCAGGATCTATTGAAGTGTGGGATTTCCTTAGTGTTGATTCTCAGGTGCCGTATCTTG CCCTTACCTATGGTTTCTCTAGTTCTTTCTCTATTGTTGAGACATTGTCTGTTGCCCTTGGGGATAACCCATCTGAAACTAGTGAGAGAAATACAAATAT TCCCGGATCTACGACATATATCTTTAACACGAAGGAATGGTTGTATACAGAGAAGTCTATATCGAAGGTAAATGAGAGCATAAACAAGGTGCCAAATTAT ATGCGGAAAAGACTTGGTAAAGATCTTCAAAGACCATTCGAAGATTCAGGCAGTGAATCAGATGTTCAAAGCAATATTTCACAGGTCAGAAATTTAGCTG AAACTGCAGAAAGAAGTGAGAGCAGACAGGGAGCAACAAAGTCATTTGATGCTGCCCCTGTAGATTCTAATATTCCTCCTGAGTGGGTGCCACCAAATTT AGCACTTCCTCTCTTAGATTTGGTAGGTGTCATTTTCCAGATGCAAGAAGGGGGGTGGATCAGAAGGAAAGCATTTTGGATGGCTAAACAGGTATTGCAA CTGGGAATGGGGGATGCTTTGGATGATTGGTTAATAGAGAAAATCCAGCTCCTTCGTAGAGGTTCAGTCATTGCGTCGGGGATCAAGCGGGTTGAACAGA TACTGTGGCCCGATGGTATATTTATAACAAAACACCCAAGTCGACAGCCACCATCTACTGTTGATACAGCCAGTGGTTCTTCCAAAAAAGATCAAGCAGT AGATTTGTCTTCACCAAAACAGAGTTCACCTATCAGCCGGCAACCCTCAGTTTTGTCTCCTCCTCAATTGAGTGAGGAGCAGCAAAGGGATGCAGAAAGA CGTGCTAAGTTTGTCTATGAGCTAATGATTGATAATGCCCCAAGCACTATTGTAGGGCTTGTTGGCCGAAAGGAGTATGAGCAATGTGTTAAAGATGTCT ATTTCTTTATTCAGTCACCAGTTTGTATGAAGCAGCTGGCTTATGATCTCATTGAGCTGCTTCTGTTGTCGGCATTTCCAGAGATGGATTACGTGTTCAG AGAGTTACACGAGGAAAAGAGCAAGTTCGGGGAACTTAAAGCACAAGACTAA
AA sequence Show only first row Show all	>Lus10025785 pacid=23177532 polypeptide=Lus10025785 locus=Lus10025785.g ID=Lus10025785.BGIv1.0 annot-version=v1.0 MKRKTATYVSKPLPPSATPQDKPHYARSIQKSIWRKKVNSPAVEDAINNFTKHLVSEWVTDLWYGRLTPDKQGPEELVEIMNGVLGEFSARLRDINLLDL LTRDLINLLCSHLVLFRSSQAKIEKKQSDLLSIEQRDREIKRVLANENKLHPALFSAEAEHKVLQHLMEGLISFTFRPEDRKCSFFGYLARELLACAVMR PVLNLASPRFLNERIEILVKSKSKRGLASADGTSLSKPNENLRTYDQSPRFLDPTGTGVELVQLKNDASKNRNGTPETDNTNAIRISKDPLLSIDTRSTR SWSSLPSNSQVSNLAGGQQNPPGEQWGDMLDVISKRKTAALAPENFENMWTKGMNYNRNGGGNGLIEQVRHTSSSSKTIAGSKNNFEGQNKDGMTYLDSR LSSNTVKSLGYSQPRVPNHVNLITESRLNSLMHTSYLDDGQQRLMSEDGDVSDSSSASHHIYDDDEEEEEDAIDITGLHSPGTKVWDGKSNRNMPVSHIH HPLENPKGRGVQRPSKKQTRPQRLSGRHTGKKRSRSSNPGIHVWQEVERTSFLSGDGQDVLSAKGCTKTDDSTDDSEVESLGRLSSGTAACSSRISLPIA EVHTPSDISAKTMMLDSFYKLKCEVLGANIVKGDSTTFAVYSISVTDVNGNSWSIKRRFRHFEELHRRLKEYPEYSLHLPPKHFLSTGLDMSVIQERCKL LDRYLKKLLQIPRVSGSIEVWDFLSVDSQVPYLALTYGFSSSFSIVETLSVALGDNPSETSERNTNIPGSTTYIFNTKEWLYTEKSISKVNESINKVPNY MRKRLGKDLQRPFEDSGSESDVQSNISQVRNLAETAERSESRQGATKSFDAAPVDSNIPPEWVPPNLALPLLDLVGVIFQMQEGGWIRRKAFWMAKQVLQ LGMGDALDDWLIEKIQLLRRGSVIASGIKRVEQILWPDGIFITKHPSRQPPSTVDTASGSSKKDQAVDLSSPKQSSPISRQPSVLSPPQLSEEQQRDAER RAKFVYELMIDNAPSTIVGLVGRKEYEQCVKDVYFFIQSPVCMKQLAYDLIELLLLSAFPEMDYVFRELHEEKSKFGELKAQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	0	1
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	1.4	0.9169
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	1.4	0.9286
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	1.7	0.9124
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10040831 [exp]	3.3	0.8776
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	4.5	0.8669
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	5.3	0.8715
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	5.5	0.8965
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	6.5	0.8668
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	8.2	0.9060
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	8.4	0.8907

Compare expression of checked genes

Lus10025785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.