Plant FIBer expression Database

Lus10025786 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035876
[exp]
139 / 1e-39 AT1G52500 400 / 3e-138 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, MUTM homolog-1 (.1.2)
Lus10035877
[exp]
74 / 1e-15 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G031100
[exp]
42 / 0.0001 AT1G52500 446 / 5e-156 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, MUTM homolog-1 (.1.2)
PFAM info
Representative CDS sequence
>Lus10025786 pacid=23177642 polypeptide=Lus10025786 locus=Lus10025786.g ID=Lus10025786.BGIv1.0 annot-version=v1.0
ATGATAAACCCACGACGCAGATTGCCAAAATCACGATTCTCTTCTTGGCCTCCTCCACAAGGTCCTTCACTATCGCCTGCCGCTGCTGATGCTGCTGTTC
TGAGCTCATTTCGAATTCCTGCTCCCTCTGAATTCCACGGGGATCAGAGACCTAGCAGCAGCAGCACCACCACCAGTATAAGCTCGATCGAAACCACTGC
TTATGTACCTGAGTTGCAAAAATTAACCGGAGATCAGGCTGGCAAAGAGAGGTCAGCATCCAAGGAGAAACCTTTGAAGAGAAAGAAGGGAAAGAATGAT
GGTATTGATGAAGATGGTGAAATGGAATCAGGAAATGAGGACGAGAAAGCCTCGGTGAAGGCCAGACCCAAAAGAGAATTGAAACCCAGAGGTGGTCGTG
CCAAGGAGACAAAGGCAAGTTACGAGAAAGACGCAGACGAAGATGATGATAGTGATGAAGATATTGACAGTAGTGAAGATCAAAACAAGAAACCTGGGAA
GACAAGTAATAGAAAGCGCAAAGCAAGGCAGGGAAAGCATCAAAAGGAAATGTGA
AA sequence
>Lus10025786 pacid=23177642 polypeptide=Lus10025786 locus=Lus10025786.g ID=Lus10025786.BGIv1.0 annot-version=v1.0
MINPRRRLPKSRFSSWPPPQGPSLSPAAADAAVLSSFRIPAPSEFHGDQRPSSSSTTTSISSIETTAYVPELQKLTGDQAGKERSASKEKPLKRKKGKND
GIDEDGEMESGNEDEKASVKARPKRELKPRGGRAKETKASYEKDADEDDDSDEDIDSSEDQNKKPGKTSNRKRKARQGKHQKEM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10025786
[exp]
0 1
AT3G26040 HXXXD-type acyl-transferase fa... Lus10025522
[exp]
3.5 0.7417
AT1G16930 F-box/RNI-like/FBD-like domain... Lus10023036
[exp]
3.7 0.7429
AT1G06340 Plant Tudor-like protein (.1) Lus10039027
[exp]
5.3 0.7429
AT5G36220 CYP91A1, CYP81D... CYTOCHROME P450 91A1, cytochro... Lus10018718
[exp]
6.5 0.7429
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Lus10026169
[exp]
7.5 0.7429
AT2G44220 Protein of Unknown Function (D... Lus10006862
[exp]
8.4 0.7429
Lus10033046
[exp]
8.9 0.6955
AT4G26466 LRE lorelei (.1) Lus10011066
[exp]
9.5 0.7182
AT5G25180 CYP71B14 "cytochrome P450, family 71, s... Lus10024331
[exp]
9.5 0.6749
AT5G13800 CRN1, PPH Co-regulated with NYE1, pheoph... Lus10005320
[exp]
10.0 0.6619

Lus10025786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.