Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52510 533 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 154 / 3e-43 alpha/beta-Hydrolases superfamily protein (.1) AT1G54990 44 / 0.0001 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 41 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035875 [exp] 657 / 0 AT1G52510 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002142 [exp] 154 / 3e-43 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10008747 [exp] 82 / 9e-17 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 56 / 2e-08 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 54 / 8e-08 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 54 / 9e-08 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 51 / 8e-07 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 50 / 9e-07 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 50 / 1e-06 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201500 [exp] 546 / 0 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G175700 [exp] 165 / 3e-47 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 49 / 2e-06 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 49 / 3e-06 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 46 / 3e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 45 / 3e-05 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 44 / 9e-05 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 44 / 0.0001 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 43 / 0.0003 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 43 / 0.0003 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10025787 pacid=23177514 polypeptide=Lus10025787 locus=Lus10025787.g ID=Lus10025787.BGIv1.0 annot-version=v1.0 ATGGCTCCCCTCCTCCATCCTTGTTCTTCGTCTCTTTCACTCTCCCAGAAAACTACCCAACTATGTTTTCCAACACTCATCACTAACAGAGCTACTGCAA CCACTTCCAGAAGAGGTTTAACGGTGAGAGCAAGCGAAGACGACGACGAAGCAGCAGCACCGGATTTCAATCCATTTGGTTTCGTGACAGATAACCCATC CAGCCGCTCCGCCATTCAGCTGCCCGCGTCACCTGCTCAGGATGGCAATGTCGGCCAGATGCTCTATCGGATAGAAGATAAAGGGAGGGAGTTTGGCAAG TATGTTGATGCAGGTCCTGAGAAGTTGAGGTGGTTCGTCAGAGAAACTGGATCACCCGACACTCGAAGAGGAACAATTCTGTTTCTCCATGGAGCTCCAA CTCAATCTTTTAGCTACAGAGTCGTTATGTCCCAGATGTCGGATTCCGGGTTCCATTGCTTGGCACCTGACTGGATAGGATTTGGTTTCAGTGACATGCC ACAGCCTGGATATGGATTCGATTATACAGAGAAGGAGTTCCATGATGCTTTGGATGACTTGCTTGTGGAACTGCAAGTCAACACTCCTTTATTCCTTGTA GTTCAGGGATTTCTTGTAGGTTCTTATGGACTCACTTGGGCATTGAAAAATGCAAGCAAGATCTCAAAACTTGCTATTTTAAATACACCTTTGACTGTTT CATCTCCTGTTCCTGGACTATTCCAAAAGTTGAGGATCCCGCTCTTTGGCGAATTCACCTGCCAGAATGCTATAACCGCTGAGCGCTTTATCGAAGCAGG TAGCCCCTATGTTCTGAAGACAGAGAAGGCTGATGTTTATAGATTGCCATACCTTGCTAGTGGTGCACCGGGATTCGCTCTGCTAGAGGCTGCAAGGAAA ATTAATTTCAATAACGTTCTAAGTGAAGTGGCGAGTGGACTGACATCTGAAAGGTGGGATAAGCCAATACTTGTAGCCTGGGGGATAGCAGACAAGCATC TGCCTCAGTCTGTGGCGGAGGAGTTCCAGAAGGCGAATCCTCGTAACATCAAGCTTAAGTTGATTGAAGGAGCTGGCCACATGCCTCAAGAGGACTGGTA A
AA sequence Show only first row Show all	>Lus10025787 pacid=23177514 polypeptide=Lus10025787 locus=Lus10025787.g ID=Lus10025787.BGIv1.0 annot-version=v1.0 MAPLLHPCSSSLSLSQKTTQLCFPTLITNRATATTSRRGLTVRASEDDDEAAAPDFNPFGFVTDNPSSRSAIQLPASPAQDGNVGQMLYRIEDKGREFGK YVDAGPEKLRWFVRETGSPDTRRGTILFLHGAPTQSFSYRVVMSQMSDSGFHCLAPDWIGFGFSDMPQPGYGFDYTEKEFHDALDDLLVELQVNTPLFLV VQGFLVGSYGLTWALKNASKISKLAILNTPLTVSSPVPGLFQKLRIPLFGEFTCQNAITAERFIEAGSPYVLKTEKADVYRLPYLASGAPGFALLEAARK INFNNVLSEVASGLTSERWDKPILVAWGIADKHLPQSVAEEFQKANPRNIKLKLIEGAGHMPQEDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	0	1
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	1.0	0.9722
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	1.7	0.9438
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	2.0	0.9483
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012160 [exp]	5.7	0.9173
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	6.7	0.9210
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	7.2	0.9410
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	8.4	0.8985
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	8.4	0.9386
AT2G15020			unknown protein		Lus10013880 [exp]	8.8	0.9272
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	9.5	0.9190

Compare expression of checked genes

Lus10025787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.