Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04770 900 / 0 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 627 / 0 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1) AT1G32500 92 / 1e-19 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035874 [exp] 1051 / 0 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10034750 [exp] 1010 / 0 AT4G04770 907 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10017374 [exp] 68 / 1e-11 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10010168 [exp] 67 / 1e-11 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G016900 [exp] 956 / 0 AT4G04770 924 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Potri.001G144500 [exp] 76 / 2e-14 AT1G32500 535 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.003G089700 [exp] 70 / 1e-12 AT1G32500 544 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [flax] [poplar] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Lus10025788 pacid=23177668 polypeptide=Lus10025788 locus=Lus10025788.g ID=Lus10025788.BGIv1.0 annot-version=v1.0 ATGGCATCTCTTTTGACCAACGGTATCCCCCGCTTCTCTTCCCACCCTATCTCCGATTCATCCAAGCTCCTCAAACCCTTCTTCTCAATTTCAACGCCTT CCTTCAGGATACGAGCAGATCTCACCGATTCCGCTACTCTTTCTTCTTCTTCTTCTTCAACGTCCACTCTTACCTCCTCCTCCGATGAAAAAATCAAGGA AATCCTTCGCAACCGTGATTACAAGGAGAAATTCGGCTTTAATGTGGATATCGACTCCTTCTCCATCCCCAAGGGTCTTTCCGAAGATACAATCAGGTCC ATTTCCAAGTTGAAGGACGAGCCTGACTGGATGCTTGATTTTAGGTTGAAAGCTTTTCAAAAATTCTTGCTTATGAAAGAGCCTAACTGGTCTGATAATC GATACCCACCGATTAACTTCCAAGATCTTTGCTATTATTCTGCTCCCAAGAAGAAGCCCACTTTGAATAGTCTTGATGAAGCTGACCCAGAGCTCCTTAA GTACTTCGATAGGCTGGGTGTGCCTCTCAATGAGCAGAATAGATTAGCTAATGTTGCTGTTGATGCTGTTCTTGATAGCGTATCCATAGCTACAACGCAC AGGAAGACTTTAGAGAAGTCTGGTGTTATCTTTTGTTCTATATCTGAGGCTGTGCAGAAGTATCCGGACTTGGTGAAGAAGTATTTGGGGAAGGTTGTCC CAAGTGAGGACAACTATTATGCAGCTCTTAATTCTGCAGTGTTTAGTGATGGTTCGTTTCTCTATATACCAAAGGATACTAAATGCCCCATGCAGATTTC CACCTACTTTAGAATCAACGCCATGGAAACTGGCCAGTTTGAGAGGACTTTGATTGTTGCTGATGATCGTAGCTTTGTTGAGTACTTGGAGGGTTGTACT GCTCCTTCCTATGATACTAACCAACTTCATGCAGCTGTTGTTGAGTTATACTGTGCTGAGAGTGCTGAGATTAAATATTCCACAGTGCAGAACTGGTATG CTGGTGATGAGGAAGGGAAAGGCGGCATTTATAACTTTGTTACCAAGCGTGGAGTTTGTGCTGGGGATCGATCTAAGATATCGTGGACTCAGGTGGAGAC AGGTTCTGCAATTACTTGGAAGTACCCTAGTGTTGTCCTGGAAGGAGATAACACTGTAGGGGAGTTCTATTCAGTTGCTTTGACAAATAATTACCAGCAG GCAGATACAGGGACCAAGATGATCCACAAGGGTAAAAACACCAAAAGTCGAATTATATCAAAGGGTATCTCGGTTGGGCATTCAAGAAACTGTTACAGGG GGCTTGTCCAGATTCAGTCAAAAGCAGAGAATGCCCGCAACTCATCTCAGTGTGACTCGATGCTTATTGGTGATACTGCAGCTGCCAATACCTATCCTTA TATCCAGGTGAAGAACCCAACAGCAAGGGTGGAACACGAAGCGAGCACTTCGAAAATCGGAGAGGATCAGCTGTTCTACTTTCAGCAGAGGGGGATAGAC TACGAAAGAGCAATGGCAGCAATGATATCAGGGTTTTGCAGAGATGTGTTCAATGAGCTTCCTGATGAATTTGGTGCTGAGGTGAATCAGCTTATGAGCT TGAAGCTTGAAGGGTCCGTCGGTTAA
AA sequence Show only first row Show all	>Lus10025788 pacid=23177668 polypeptide=Lus10025788 locus=Lus10025788.g ID=Lus10025788.BGIv1.0 annot-version=v1.0 MASLLTNGIPRFSSHPISDSSKLLKPFFSISTPSFRIRADLTDSATLSSSSSSTSTLTSSSDEKIKEILRNRDYKEKFGFNVDIDSFSIPKGLSEDTIRS ISKLKDEPDWMLDFRLKAFQKFLLMKEPNWSDNRYPPINFQDLCYYSAPKKKPTLNSLDEADPELLKYFDRLGVPLNEQNRLANVAVDAVLDSVSIATTH RKTLEKSGVIFCSISEAVQKYPDLVKKYLGKVVPSEDNYYAALNSAVFSDGSFLYIPKDTKCPMQISTYFRINAMETGQFERTLIVADDRSFVEYLEGCT APSYDTNQLHAAVVELYCAESAEIKYSTVQNWYAGDEEGKGGIYNFVTKRGVCAGDRSKISWTQVETGSAITWKYPSVVLEGDNTVGEFYSVALTNNYQQ ADTGTKMIHKGKNTKSRIISKGISVGHSRNCYRGLVQIQSKAENARNSSQCDSMLIGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGID YERAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	0	1
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	1.4	0.8776
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	1.7	0.8747
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	6.5	0.8774
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	7.5	0.8631
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	8.5	0.8516
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	9.2	0.8604
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	9.5	0.8382
AT3G14280			unknown protein		Lus10037453 [exp]	9.9	0.8384
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	11.5	0.8578
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	12.0	0.8080

Compare expression of checked genes

Lus10025788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.