Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65210 401 / 5e-140 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 396 / 6e-138 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 303 / 4e-101 bZIP bZIP transcription factor family protein (.1) AT1G22070 292 / 7e-97 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 245 / 4e-79 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G68640 247 / 2e-78 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT3G12250 236 / 4e-76 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G08320 229 / 9e-73 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 230 / 3e-72 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G06960 222 / 3e-70 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035873 [exp] 687 / 0 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 563 / 0 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 561 / 0 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10042005 [exp] 322 / 2e-108 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 320 / 1e-107 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10009055 [exp] 309 / 1e-103 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10031349 [exp] 288 / 2e-95 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10026166 [exp] 259 / 1e-84 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 258 / 3e-84 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085700 [exp] 456 / 2e-161 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 444 / 1e-156 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 351 / 3e-120 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 334 / 1e-113 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 311 / 4e-106 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.016G036500 [exp] 254 / 7e-81 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 250 / 2e-79 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G058800 [exp] 251 / 3e-79 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G039000 [exp] 249 / 3e-79 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 249 / 5e-79 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10025789 pacid=23177572 polypeptide=Lus10025789 locus=Lus10025789.g ID=Lus10025789.BGIv1.0 annot-version=v1.0 ATGAACTCCTCGTCAACCCATTTTGTGACTTCGGGAGGGATGGACATGTATGATCATGTGCAACAGCTCAGCATGTGGGGTGAAACTTTCCGGAGTAATG GAAGTCCTAATGCATTGACATCAATCCTCATACCAAATGCAGCCCAGTCTTTGATTATAACAGCAGATATGAAGCTGGACAATCAGTCAGAAGATACTTC AAATGGTACTCCTGGACCTCTTTATAAATATGACCAAGAAGTGACTAAATCCAGTGATAAGGTTCAAAGACGTCTTGCCCAAAATCGCGAGGCTGCTCGT AAGAGTCGTCTACGTAAAAAGGGTTCATATGCATGCAGTGGAATTGAAGGTAATCGTGTAGGTTCGAATGGAGCCATAAACTCAGGAATTGCAACATTTG AGATGGAGTATGGACATTGGATAGAAGAGCAGCAGAAGCATGTTTGTGAACTGCGGGCTGCTCTAAGTTCTGAGATAGGTGATGGAGACATTCGCATACT TGTAGAAGCTAGTTTGAACCACTATTACGAACTTTTCCGCATGAAGGGAGCAGCTGCAAAGGCTGATGTTTTATATGTCATGTCTGGACTGTGGAAGTCT CCAGCAGAAAGGTTTTTCCTCTGGATAGGAGGCTTTCGTCCTTCAGAACTTATTAAGGTTTTAAGGCCTCAAATTGAACCCTTGGCAGAACCACAACTTC AGAATATCTGCAACCTTGGACAATTGTGCCAACAAGCAGAAGATGCTCTATCACAAGGCATGGAGAGACTCCAGCAAACCCTTGCCCAGAGTGTAGCGGA TGGTCAGCTGGGTGAAGCAAGTTACTCGCCGCAGATAGATACTGCCATGGAGAAGTTAGATTCCTTGATCCGCTTTGTTCGGCAGGCTGATCACCTGCGA AAACTGGCGCTGGTACAGGTGTCGCAGATACTGACACCGCGCCAGGCAGCTCGAGGTCTGCTTGCTCTTGGAGAATACTTCGACAGACTAAAGTCTTTGA GTCGAGTTTGGGAAACAAATAGTCCACGTGAGCAAGCGTAG
AA sequence Show only first row Show all	>Lus10025789 pacid=23177572 polypeptide=Lus10025789 locus=Lus10025789.g ID=Lus10025789.BGIv1.0 annot-version=v1.0 MNSSSTHFVTSGGMDMYDHVQQLSMWGETFRSNGSPNALTSILIPNAAQSLIITADMKLDNQSEDTSNGTPGPLYKYDQEVTKSSDKVQRRLAQNREAAR KSRLRKKGSYACSGIEGNRVGSNGAINSGIATFEMEYGHWIEEQQKHVCELRAALSSEIGDGDIRILVEASLNHYYELFRMKGAAAKADVLYVMSGLWKS PAERFFLWIGGFRPSELIKVLRPQIEPLAEPQLQNICNLGQLCQQAEDALSQGMERLQQTLAQSVADGQLGEASYSPQIDTAMEKLDSLIRFVRQADHLR KLALVQVSQILTPRQAARGLLALGEYFDRLKSLSRVWETNSPREQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	1.7	0.8950
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	4.5	0.8849
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	4.9	0.8592
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	6.7	0.8711
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	6.9	0.8707
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	7.5	0.8602
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	7.9	0.8574
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	8.1	0.8463
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	8.1	0.8670
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Lus10021190 [exp]	8.9	0.8389

Compare expression of checked genes

Lus10025789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.