Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52280 258 / 3e-88 AtRABG3d RAB GTPase homolog G3D (.1) AT3G16100 254 / 4e-87 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT3G18820 241 / 1e-81 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G49300 233 / 8e-79 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT1G22740 187 / 2e-60 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1) AT4G09720 182 / 1e-58 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT2G21880 153 / 3e-47 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT5G39620 98 / 1e-25 AtRABG1 RAB GTPase homolog G1 (.1) AT2G44610 70 / 6e-15 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G10260 58 / 2e-10 AtRABH1e RAB GTPase homolog H1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035872 [exp] 291 / 3e-101 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10040468 [exp] 237 / 4e-80 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10042328 [exp] 172 / 1e-54 AT3G18820 367 / 3e-131 RAB GTPase homolog G3F (.1) Lus10028719 [exp] 169 / 2e-53 AT4G09720 341 / 5e-121 RAB GTPase homolog G3A (.1.2.3.4) Lus10006059 [exp] 156 / 1e-48 AT4G09720 323 / 4e-114 RAB GTPase homolog G3A (.1.2.3.4) Lus10023582 [exp] 150 / 4e-46 AT3G18820 330 / 4e-117 RAB GTPase homolog G3F (.1) Lus10019501 [exp] 65 / 6e-13 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 65 / 6e-13 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10026045 [exp] 61 / 6e-12 AT5G10260 209 / 5e-70 RAB GTPase homolog H1E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053400 [exp] 249 / 8e-85 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.009G115000 [exp] 246 / 9e-84 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.004G153400 [exp] 246 / 1e-83 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.001G182900 [exp] 245 / 2e-83 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.002G062400 [exp] 189 / 2e-61 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G198800 [exp] 181 / 6e-58 AT4G09720 370 / 2e-132 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G085300 [exp] 160 / 5e-50 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.007G079700 [exp] 124 / 5e-36 AT4G09720 272 / 3e-94 RAB GTPase homolog G3A (.1.2.3.4) Potri.002G135500 [exp] 69 / 2e-14 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 66 / 3e-13 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10025790 pacid=23177443 polypeptide=Lus10025790 locus=Lus10025790.g ID=Lus10025790.BGIv1.0 annot-version=v1.0 ATGGCTTCTCGTCGGCGGATGCTCCTCAAGGTCATTATTCTCGGCGATAGCGGGTACTTTGTCTTCCTCCTCTCCTTCCTCTTTTTCTTCTTCTCATTTG TCCATTATTCTCACGAATCAATTCTTCCATCTCGTTACAGGGTAGGCAAAACTTCACTGATGAATCAGTATGTAAATCGAAAGTTTAACAATCAGTACAA GGCGACGATAGGAGCCGATTTCCTCACAAAGGAAGTTCAGTTTGAGGACAGATTGTTCACATTGCAGGCTAGTCCACCTGATCCAGAAAACTTCCCATTT GTCGTGCTAGGAAATAAGGTAGATATAGACGGTGGCAATAGTCGAGTGGTTTCTGAAAAGAAAGCAAAGGCTTGGTGTGCTTCAAAAGGAAACATACCCT ACTTTGAGACTTCTGCAAAAGAAGGATTCAACGTGGATGCTGCTTTCGAGTGCATAGCAAAGAATGCGCTTAAGAATGAACCAGAAGAGGAAATGTATCT ACCTGACACCATTGATGTTGGAGTTGGAGGGCAGCAACAGAGATCCACAGGCTGTGAATGTTGA
AA sequence Show only first row Show all	>Lus10025790 pacid=23177443 polypeptide=Lus10025790 locus=Lus10025790.g ID=Lus10025790.BGIv1.0 annot-version=v1.0 MASRRRMLLKVIILGDSGYFVFLLSFLFFFFSFVHYSHESILPSRYRVGKTSLMNQYVNRKFNNQYKATIGADFLTKEVQFEDRLFTLQASPPDPENFPF VVLGNKVDIDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIAKNALKNEPEEEMYLPDTIDVGVGGQQQRSTGCEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10025790 [exp]	0	1
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	6.9	0.6688
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10041518 [exp]	7.1	0.6961
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	10.5	0.7375
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10016132 [exp]	14.4	0.7394
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	15.6	0.6873
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	15.9	0.7319
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	20.8	0.7210
AT3G29130			unknown protein		Lus10038450 [exp]	27.6	0.6948
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	31.6	0.7064
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	34.6	0.7082

Compare expression of checked genes

Lus10025790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.