Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15230 84 / 5e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035871 [exp] 225 / 2e-76 AT1G15230 90 / 3e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053500 [exp] 129 / 1e-38 AT1G15230 92 / 3e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025791 pacid=23177456 polypeptide=Lus10025791 locus=Lus10025791.g ID=Lus10025791.BGIv1.0 annot-version=v1.0 ATGGAAGCGAGTCAGGGCAAAGAAGCAACTGGAGGGCTGCTCCACCAGATCCTACCCCCGCGGCTGGAAGACGCCGGTCTAGAAGACTGCGCGCTTCCTC CGGACTCCATCAAAGAAGCATTTCTCAAAGCCGCCTCCGCTGTAAAATCCCGTGCAACCTCCATCTTCAACGACAGCGAAGATGATTGCGTGCAGGATCC CTGGCCGGGGGGAGAGGCCAATGATGTCTCTGATGATATTAATGTCGGTCTTCCACCTCTGGACGGCGGCGCGGACGCGCTGGTGGGGATAAACGAGGGT TTAGATGAGAAGGGAAGCTGCGTGAAAGGCTTGGATTCGGTCGAGAAGGACCAGGATCAAGTGGTGGTAGTCGGGGGTGAGGTGGATGATAGCGGTCCCT GTAAGGGTTTGGAAATTGGGGGAAAAGCGAAGAATGATGAGATTGAGGATGATGAAGAGAAGGAGAGACCAATTTTGACTGGAGGCTTTATGTAA
AA sequence Show only first row Show all	>Lus10025791 pacid=23177456 polypeptide=Lus10025791 locus=Lus10025791.g ID=Lus10025791.BGIv1.0 annot-version=v1.0 MEASQGKEATGGLLHQILPPRLEDAGLEDCALPPDSIKEAFLKAASAVKSRATSIFNDSEDDCVQDPWPGGEANDVSDDINVGLPPLDGGADALVGINEG LDEKGSCVKGLDSVEKDQDQVVVVGGEVDDSGPCKGLEIGGKAKNDEIEDDEEKERPILTGGFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15230			unknown protein		Lus10025791 [exp]	0	1
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	7.1	0.8093
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	13.7	0.7776
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	15.9	0.7917
AT4G37830			cytochrome c oxidase-related (...		Lus10011574 [exp]	23.2	0.7704
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	23.4	0.7527
AT2G20940			Protein of unknown function (D...		Lus10025069 [exp]	25.1	0.7748
AT5G35320			unknown protein		Lus10027608 [exp]	28.2	0.7504
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10041709 [exp]	28.5	0.6623
					Lus10032951 [exp]	28.5	0.7621
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10026129 [exp]	29.4	0.7441

Compare expression of checked genes

Lus10025791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.