Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16110 553 / 0 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G52260 532 / 0 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT5G60640 262 / 1e-81 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 240 / 2e-73 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G21750 146 / 7e-39 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 130 / 4e-33 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT2G47470 69 / 4e-13 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G35620 53 / 2e-07 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G04980 50 / 2e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 50 / 2e-06 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035870 [exp] 840 / 0 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10037403 [exp] 258 / 8e-80 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 254 / 9e-79 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 251 / 1e-77 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10042721 [exp] 140 / 4e-36 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 136 / 3e-35 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 135 / 9e-35 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10041307 [exp] 108 / 3e-25 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10025679 [exp] 94 / 1e-20 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183500 [exp] 617 / 0 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.009G013600 [exp] 250 / 4e-77 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.005G179000 [exp] 142 / 1e-37 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 137 / 1e-35 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.010G222100 [exp] 103 / 7e-24 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.008G040100 [exp] 99 / 2e-22 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.014G122800 [exp] 67 / 7e-12 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 66 / 1e-11 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.019G082400 [exp] 56 / 3e-08 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 55 / 4e-08 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10025792 pacid=23177575 polypeptide=Lus10025792 locus=Lus10025792.g ID=Lus10025792.BGIv1.0 annot-version=v1.0 ATGCCTCAATTTGCTGAGGCTGCCAATAAGCTCAAGGAATTGGGAAGTCCAGTTGTGATGGCTAAGCTTGATGCTGAAAGGTATCCAAAGGCAGGCTCGG CACTTCAGATCAGAGGGTTTCCTACTTTGCTTCTCTTTGTCAACGGCAGCTCTCAGTCTTACACTGGTGGCTTTACTGGGGAGGATATCGTGATCTGGAC CAGAAAAAAGACCGGGGATCCGGTTATCAGAGTGAATTCTGTTTCTGAAGCAGAGAAATTCCTTGAGAGGCATCATATATTCGTTCTTGGTCTTTTTGAA AAGTTCCAGGATTCTGATTATGAAGAATTTATCAAGACAGCAGTCTCTGACAACGAAATCCAGTTTGTTGAAGTGGGTGACCATGAAGTAGCTAAAGTTC TGTTCCCAGGCATCAAGTCCACTGGAAATTTCATTGGACTTGTGAAAAGTGAACCTGAAAAATATACTGCTTATGAAGGGGACTTTGAGATGGACAAGAT ACTGGAGTTTTTTGCTTACAATAAGTTTCCGTTGGTTACCAGATTGACAGAGTTAAATTCTGTCTCTGTGTACTCTAGTCCGATAAAACTTCAGGTTATG GTATTTGGAGGGCATGATGATTTCGACAGACTTATCGAGTCTCTGCAACAGGTTGCAAAGAAGTTCAAATCAAAGATAATTTTCATGTATGTAGACATCG AGGATGAGAACCTAGCAAAGCCTTTCTTGACATTGTTCGGGCTTGAAGATTCAGATGGCACTTTGGTGACAGCTTTTGATAACCATGTTAGCGCCAAATA TTTGTTGGAATCTGAGCCAACTTCTGGGCACATAGAAGATTTCTGCTTAAGGCTTCTGGATGGGAGTTTTCCACCATACTATAAATCACAACCAGCACCT GATAATAAGAACACAAGTGTCCTGGCGATCGTCGGAAAAACTTTTGATGACTTGGTTCTAAGTAATTCTAAGAATGTACTTCTGGAGATATTTACACCTT GGTGCATCAACTGTGAGACAACAAGCAAGCAGGTTGAAAAGCTTGCAAAGCATTTCAAAGGGTCGGACAGCTTAGTCGTAGCAAGAATAGATGCCTCTGC AAATGAACATCCCAAGTTGCAGGTAACTGACTTCCCAGCGCTCATGTTCTACCCGGCGGAAGACAAAGCTAATCCGATCAAGCTTTCAACAAAGTCCAGT GGAAAGGACTTGGCAGCAACCATCAACAAGCATTTGAAGTCTCAAGGAACCAAAGATGAGCTATAA
AA sequence Show only first row Show all	>Lus10025792 pacid=23177575 polypeptide=Lus10025792 locus=Lus10025792.g ID=Lus10025792.BGIv1.0 annot-version=v1.0 MPQFAEAANKLKELGSPVVMAKLDAERYPKAGSALQIRGFPTLLLFVNGSSQSYTGGFTGEDIVIWTRKKTGDPVIRVNSVSEAEKFLERHHIFVLGLFE KFQDSDYEEFIKTAVSDNEIQFVEVGDHEVAKVLFPGIKSTGNFIGLVKSEPEKYTAYEGDFEMDKILEFFAYNKFPLVTRLTELNSVSVYSSPIKLQVM VFGGHDDFDRLIESLQQVAKKFKSKIIFMYVDIEDENLAKPFLTLFGLEDSDGTLVTAFDNHVSAKYLLESEPTSGHIEDFCLRLLDGSFPPYYKSQPAP DNKNTSVLAIVGKTFDDLVLSNSKNVLLEIFTPWCINCETTSKQVEKLAKHFKGSDSLVVARIDASANEHPKLQVTDFPALMFYPAEDKANPIKLSTKSS GKDLAATINKHLKSQGTKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	0	1
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	4.6	0.7774
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	10.6	0.7534
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	11.7	0.7402
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	12.6	0.6977
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	15.7	0.7353
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10008592 [exp]	21.9	0.6331
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	27.0	0.7025
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	33.8	0.7175
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	38.4	0.6721
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	43.5	0.6872

Compare expression of checked genes

Lus10025792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.