Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45688 182 / 8e-55 unknown protein AT3G24600 166 / 1e-47 Late embryogenesis abundant protein, group 2 (.1) AT5G42860 151 / 2e-43 unknown protein AT4G35170 125 / 1e-33 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 103 / 2e-25 unknown protein AT3G08490 72 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035869 [exp] 506 / 0 AT1G45688 219 / 3e-69 unknown protein Lus10034926 [exp] 246 / 3e-80 AT1G45688 182 / 5e-55 unknown protein Lus10023652 [exp] 246 / 3e-80 AT1G45688 183 / 2e-55 unknown protein Lus10010232 [exp] 186 / 1e-56 AT1G45688 416 / 3e-146 unknown protein Lus10009749 [exp] 161 / 2e-47 AT5G42860 256 / 2e-84 unknown protein Lus10022644 [exp] 159 / 4e-46 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10029743 [exp] 154 / 3e-44 AT1G45688 301 / 4e-101 unknown protein Lus10003341 [exp] 134 / 2e-36 AT2G41990 221 / 4e-70 unknown protein Lus10029519 [exp] 86 / 1e-18 AT3G08490 223 / 7e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183600 [exp] 417 / 1e-147 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 405 / 9e-143 AT1G45688 176 / 6e-53 unknown protein Potri.006G160100 [exp] 276 / 3e-92 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.002G124600 [exp] 192 / 2e-59 AT1G45688 284 / 1e-94 unknown protein Potri.007G045000 [exp] 191 / 1e-58 AT1G45688 273 / 4e-90 unknown protein Potri.014G026800 [exp] 175 / 2e-52 AT1G45688 301 / 2e-101 unknown protein Potri.004G180900 [exp] 172 / 1e-51 AT2G41990 256 / 1e-84 unknown protein Potri.009G140600 [exp] 167 / 2e-49 AT2G41990 232 / 5e-75 unknown protein Potri.009G061300 [exp] 89 / 4e-20 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 82 / 2e-17 AT3G08490 196 / 6e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10025793 pacid=23177478 polypeptide=Lus10025793 locus=Lus10025793.g ID=Lus10025793.BGIv1.0 annot-version=v1.0 ATGCATTCGGCGAAATCGGAGTCGGATATAACCAGTCTAGCTCCGTCGTCGCCGTCCAGGTCGCCAAAGCGGCCTGTTTACTACGTGCAGAGCCCCTCGA GGGATTCACACGATGGGGACAAGTCGTCGTCTTTGCAGCCGAGTCCGATGGAGTCGCCGTCACACCCTTCGTACGGGCGGCACTCGAGGAACTCGTCTGG GAGCAGGTTTTCTGGGATATTCAGGTCTTCCTCAGGGAGGAAAGGGGCAAGGAAAGGGAGGAACGACCACCAGAAAGGTGGTTGGAACGACAAAGGGTGG CCAGAGTGTAATGTGATAATGGAGGAAGGGGGTTACGATGATGATGAAGATAAGGTGTTTGTTAAAAGGTTCCAGGCTTTACTTGCTCTCCTCACCTTTG TCCTTTTGTTCACTGTCTTCTGCTTGATTCTTTGGGGAGCTAGCCGCCCCTACAAGGCAGAAATTGTAGTCAAGAGCTTGGCAGTGCATAACTTCTATAT CGGAGAAGGTTCTGATTCTTCAGGTGTCCCGACAAAGATGCTGACTGTGAACGCGACATTGAAGATGAACATTTACAACCCTGCTAAAATATTCGGAATC CATGTTAGCTCGACACCGATCGATCTCATATACTTTCAGATCCCGGTCGCAACTGGTCAGGTGAAGAAACACTACCAGCCAAGGAAGAGCAGAAGGACTA TATCAGTAGTGGTGGAAGGGAAGAAGGTACCGCTGTATGGAGCTGGATCGAGTTTGACGATGTCTGAAACAGCTGCGGTTGTTCCGCTGACATTGAAGTT TGAGATGAAATCACGGGGTGATGTAGTGGGGAAGCTGGTAAGGACCAAGCATAGAGTTCAGATTTCCTGCCCTGTGGTTCTCGATTCAACAAAGTCTACG CCCATCAAGTTCAAGAAGAACTCCTGCATATATGGGTAG
AA sequence Show only first row Show all	>Lus10025793 pacid=23177478 polypeptide=Lus10025793 locus=Lus10025793.g ID=Lus10025793.BGIv1.0 annot-version=v1.0 MHSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSHDGDKSSSLQPSPMESPSHPSYGRHSRNSSGSRFSGIFRSSSGRKGARKGRNDHQKGGWNDKGW PECNVIMEEGGYDDDEDKVFVKRFQALLALLTFVLLFTVFCLILWGASRPYKAEIVVKSLAVHNFYIGEGSDSSGVPTKMLTVNATLKMNIYNPAKIFGI HVSSTPIDLIYFQIPVATGQVKKHYQPRKSRRTISVVVEGKKVPLYGAGSSLTMSETAAVVPLTLKFEMKSRGDVVGKLVRTKHRVQISCPVVLDSTKST PIKFKKNSCIYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45688			unknown protein		Lus10025793 [exp]	0	1
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	1.7	0.9207
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	3.7	0.9175
AT1G44820			Peptidase M20/M25/M40 family p...		Lus10038151 [exp]	4.1	0.8641
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	6.5	0.8898
AT1G67350			unknown protein		Lus10037020 [exp]	6.7	0.8812
AT1G44414			unknown protein		Lus10025672 [exp]	7.1	0.9041
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	8.1	0.9097
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	8.7	0.9087
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10003560 [exp]	9.4	0.8765
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	12.0	0.8673

Compare expression of checked genes

Lus10025793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.