Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 397 / 1e-139 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 278 / 2e-92 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 233 / 9e-75 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 104 / 2e-25 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G17745 103 / 2e-24 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT5G28310 98 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G34200 97 / 4e-22 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 94 / 5e-21 D-3-phosphoglycerate dehydrogenase (.1) AT5G14780 88 / 2e-19 FDH formate dehydrogenase (.1) AT1G72190 84 / 4e-18 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035867 [exp] 568 / 0 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 395 / 1e-138 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 389 / 2e-136 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 386 / 4e-135 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 246 / 7e-80 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 242 / 3e-78 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 234 / 2e-75 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 221 / 3e-70 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10011442 [exp] 126 / 1e-35 AT1G79870 117 / 1e-32 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183700 [exp] 434 / 4e-154 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 404 / 2e-142 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 259 / 3e-85 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 249 / 3e-81 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 249 / 8e-81 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 238 / 8e-77 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 235 / 1e-75 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 229 / 4e-73 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 170 / 2e-52 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 113 / 3e-28 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10025795 pacid=23177618 polypeptide=Lus10025795 locus=Lus10025795.g ID=Lus10025795.BGIv1.0 annot-version=v1.0 ATGGAATCTATCGGAGTTCTTATGATGTGTCCAATGTACAGCTACCTGGAGCAAGAGCTCCAGTCTCGCTTCAATCTCTTCAAACTATGGCAACAGTCAC CCTCCCAATTGCCTAGATTCTTCGAATCCAATCAACACACTATAAAAGCAGTCGTCGGTGATGCCGGAGTTGGCGCGGATGCGAAGCTAATCGATGCGTT GCCCAATTTGGAAATTGTGGCCAGTTTCAGCGTAGGTTTCGATAAAATTGATCTGGGTAAATGCGAGGAGAAAGGAATTAGGGTTACCAACACCCCGGAT GTGCTAACTGACGACGTTGCTGATCTGGGTATTGCGTTGATTCTAGGAGTACTAAGGAAGATTTGTTCTTGTGATAAGTTTGTTAGGAGTGGTAAATGGA AACAAGGTGACTTTGAATTGACATCCAAGTTCAGCGGCAAATCAGTTGGAATAGTGGGTCTGGGGAGGATTGGTTCAGCAATAGCCAAGAGAGCTGAAGC TTTTGGATGCTCCATAAGCTACCACTCCAGATCTCAAAAAAAGCCTTTCAAAGGCTACAAATACTACGACAACATGATAGACTTGGCGAGAAACTGCAGC GTTCTTGTTGTATCATGCTCCCTGACAGAGGAAACCTACCACATAATCAACCGAGAGGTGATCGATACATTGGGTCCGCAGGGGATCCTAATCAACATCG GGAGAGGTGCACACGTAGATGAGCCGGAGCTCATTTCAGCATTGCTCGAAGGTCGACTTGCTGGTGCAGGACTAGACGTGTATGAAAATGAACCAGAGGT GCCTGAAGCATTGACTGGTCTTGACAATGTCGTACTCCTCCCCCATGTAGGGAGTGACACCGTGGAGACCTGCAAAGCAATGGCTGATCTTGTGATTGCT AATTTAGAGGCGCATTTCAGCAACAGACCCCTTCTCACCCCAGTTTTATGA
AA sequence Show only first row Show all	>Lus10025795 pacid=23177618 polypeptide=Lus10025795 locus=Lus10025795.g ID=Lus10025795.BGIv1.0 annot-version=v1.0 MESIGVLMMCPMYSYLEQELQSRFNLFKLWQQSPSQLPRFFESNQHTIKAVVGDAGVGADAKLIDALPNLEIVASFSVGFDKIDLGKCEEKGIRVTNTPD VLTDDVADLGIALILGVLRKICSCDKFVRSGKWKQGDFELTSKFSGKSVGIVGLGRIGSAIAKRAEAFGCSISYHSRSQKKPFKGYKYYDNMIDLARNCS VLVVSCSLTEETYHIINREVIDTLGPQGILINIGRGAHVDEPELISALLEGRLAGAGLDVYENEPEVPEALTGLDNVVLLPHVGSDTVETCKAMADLVIA NLEAHFSNRPLLTPVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025795 [exp]	0	1
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10040831 [exp]	1.7	0.8538
AT5G22450			unknown protein		Lus10004878 [exp]	11.0	0.8426
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	16.0	0.8284
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	16.7	0.8061
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	17.0	0.8103
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	17.1	0.8100
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	17.4	0.7778
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	17.4	0.8067
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	18.4	0.8305
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	22.0	0.7574

Compare expression of checked genes

Lus10025795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.