Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 447 / 3e-159 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 270 / 3e-89 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 253 / 1e-82 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 113 / 2e-28 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G17745 113 / 8e-28 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 110 / 7e-27 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 105 / 6e-25 D-3-phosphoglycerate dehydrogenase (.1) AT1G72190 100 / 4e-24 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G28310 95 / 9e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14780 87 / 4e-19 FDH formate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035866 [exp] 598 / 0 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 405 / 2e-142 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 399 / 2e-140 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 385 / 6e-135 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 268 / 2e-88 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 261 / 7e-86 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041393 [exp] 261 / 1e-85 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 248 / 1e-80 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041391 [exp] 118 / 9e-33 AT1G12550 131 / 3e-38 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052700 [exp] 497 / 5e-179 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 406 / 3e-143 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 272 / 5e-90 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.002G151100 [exp] 271 / 2e-89 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 267 / 8e-88 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 262 / 4e-86 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 254 / 5e-83 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G119000 [exp] 253 / 8e-83 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 133 / 4e-38 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 115 / 8e-29 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10025796 pacid=23177591 polypeptide=Lus10025796 locus=Lus10025796.g ID=Lus10025796.BGIv1.0 annot-version=v1.0 ATGGAGTCCATCGGCGTCCTCATGACTTGCCCGCCCGTCCACCTACAGCTAGTCGAAGCCGTTGAGAAGCGCTTCACTCTCTACAAGCTCGACGGTGTCC CTGACAAGCTCCAGTTCTTGACTTCCCACAAGGATTCTATCCGTGCCGTCGTCGGGAACTCCGTCGCCGGAGCAGACGCTGAGCTGATCGACCAATTGCC GAAGCTGGAGATCGTCTCCAGTTTTAGCGTTGGCCTGGACAAGATTGATCTGGGGAAATGTAAGGAAAAGGGGATTAGAGTGACTAATACGCCAGACGTT CTGACCGACGATGTGGCCGATTTGGCTTTGGGACTGATGCTAGCCGTCCTCAGGAGGCTCTGTGAGAGCGATCGCTACGTCAGGAGTGGCTTGTGGAAGA AGGGCGACTATAAATTGACTACCAAGTTCAGTGGTAAGACTGTGGGGATCATTGGTCTAGGCAGGATTGGAATGGCAATTGCGCAGAGAGCTGAAGCATT CAGCTGCCCAATCAGCTACTTCTCCAGATCACAGAAACCTGGGATTAGCTACAAGTACCATCCCACCGTCATTGACCTGGCTGCCAACTGTGACATCCTC GTAGTTGCATGCGCTCTGACGCCCGAGACCCGCCACATCGTCAACCGTGACGTCATGAATGCGCTGGGCCCCAAGGGTGTCCTCATCAACATCGGGAGGG GCCCACATGTTGATGAGCAGGAGCTGGTGTCTGCATTAGTCGAAGGTCGTTTGGGCGGTGCTGGCCTGGACGTGTTCCGGGATGAACCAAACGTGCCGGA AGAGCTTTACAAGCTTGAGAACGTGGTCCTGTTGCCTCATGTCGGAAGTGCCACGGTTGAGACCAGGCAAGCTATGGCTGACCTTGTTGTTGCCAACTTG GAAGCCCATTTCCTCAACAAGCCACTGTTAACTCCGGTGGTTTGA
AA sequence Show only first row Show all	>Lus10025796 pacid=23177591 polypeptide=Lus10025796 locus=Lus10025796.g ID=Lus10025796.BGIv1.0 annot-version=v1.0 MESIGVLMTCPPVHLQLVEAVEKRFTLYKLDGVPDKLQFLTSHKDSIRAVVGNSVAGADAELIDQLPKLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDV LTDDVADLALGLMLAVLRRLCESDRYVRSGLWKKGDYKLTTKFSGKTVGIIGLGRIGMAIAQRAEAFSCPISYFSRSQKPGISYKYHPTVIDLAANCDIL VVACALTPETRHIVNRDVMNALGPKGVLINIGRGPHVDEQELVSALVEGRLGGAGLDVFRDEPNVPEELYKLENVVLLPHVGSATVETRQAMADLVVANL EAHFLNKPLLTPVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	0	1
AT5G58020			unknown protein		Lus10035833 [exp]	1.4	0.9097
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	4.2	0.8985
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	6.2	0.9052
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	8.7	0.8982
					Lus10042010 [exp]	9.3	0.8504
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	9.5	0.8839
AT5G58020			unknown protein		Lus10036615 [exp]	10.5	0.8552
AT3G55550			Concanavalin A-like lectin pro...		Lus10004710 [exp]	11.0	0.8659
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	11.4	0.8808
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	12.0	0.8925

Compare expression of checked genes

Lus10025796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.