Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79860 604 / 0 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 584 / 0 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT3G24620 548 / 0 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 544 / 0 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G16130 503 / 1e-173 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT5G19560 491 / 5e-170 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1) AT4G38430 388 / 5e-129 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 381 / 2e-126 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 371 / 1e-121 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G00460 351 / 1e-115 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035865 [exp] 898 / 0 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10038560 [exp] 689 / 0 AT1G79860 565 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10037866 [exp] 687 / 0 AT1G79860 591 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10034927 [exp] 568 / 0 AT3G24620 564 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Lus10040248 [exp] 387 / 6e-128 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 384 / 1e-126 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 380 / 1e-125 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10023983 [exp] 380 / 2e-125 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 377 / 4e-124 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052600 [exp] 662 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.001G183800 [exp] 655 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.018G082400 [exp] 602 / 0 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Potri.009G140100 [exp] 406 / 1e-135 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.006G092600 [exp] 393 / 3e-130 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 394 / 2e-129 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.004G179742 [exp] 390 / 2e-129 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 381 / 2e-126 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 381 / 2e-125 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 380 / 3e-125 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10025797 pacid=23177494 polypeptide=Lus10025797 locus=Lus10025797.g ID=Lus10025797.BGIv1.0 annot-version=v1.0 ATGATGGTTGAAGAGCAAGAACAACAACAACAACAGCAGCAACAGCAGCACAGCCGCAGCAGCCATGGTCTAAGGTCAAGATTGTTCACTCATCTCAAGA GAATCCATATCCACGACCACTCCAAGACCTCCAGCGTTGATGAATTTGAACCCACCATTGATTCCCCAATTGCAGAGGAACATGTAACACCACCATCCAA CCTTACAGCATCAGCATCAACAAGCCAGGACACGTCCGATACCGCCGCCACCGCCACCAACATCAACGATAACAAGGCTCCAATGGAAAAATCTGTGCCT CCGCCAGCCATGGAAAAAAATCAAGGCAATATTTTCTTTTCCCTTTTTGAAATGGAGCAAATGAAAGAAAAGTTTGCTAAATTGCTGTTGGGAGAGGATA TGTCTGGTGGAGGAAAGGGGGTTTCTTCAGCTCTGGCATTGTCAAATGCCATCACCAATCTGGCAGCTTCTGTGTTCGGAGAACAATGGAAGCTTGAGCC AATGTCTCCCCAGAGGAAAGCTAGGTGGAGAAGGGAAATCGGATGGATGTTATCTGTAACTGATCACATTGTTGAATTTGTTGCTTCCCAGCAAGGCAAC ATGGAGATTATGGTTACACGACAACGGACAGATCTTCGTATGAACATCCCTGCTTTACGCAAGCTCGATGCAATGCTGATTGACTGCCTTGACAACTTTA AGGATCAGAGCGAGTTCTCTTACGTTTCGAGAGATGCACCGGACTCGGAGAAAGGACCAAAGAGGAAGGAAGAAAAATGGTGGCTACCAACTGCCAAAGT TCCTACCAATGGCCTATCAGACGCTTCAAGGAAATTTCTGCAGTACCAGAAAGATTGTGTGAACCAGGTTCTCAAAGCAGCAATGGCAATAAATGCTCAG GTTCTTGCAGAAATGGAGATTCCTGAAAGCTACATCGAATCCCTCCCCAAGAATGGTAGAGCAAGCCTTGGTGACTTGATCTACAAATGTATCACAGTCG AGTTCTTCGATCCTGACCAGTTCCTTTCCACCATGGAACTAACTTCGGAACACAAGATTCTGGACCTCAAGGACAGAATCGAGGCTTCCATAGTGATCTG GAAGAGGAAGATGAACCAGAAGGATAGTAAATCAGGTTGGGGTTCTGCTGTCAGCATAGAGAAAAGAGAGCAATTTGAAGAAAGAGCTGAAACTATACTG CTCATCATCAAACAGAGGTTCCCAGGAATCCCTCAATCTTCACTTGAGATCAGTAAGATTCAGTTCAACAAGGATGTAGGACATGCTATCCTCGAGAGTT ACTCGAGAATCCTAGAAAGCTTGGCACACACAGTTCTTTCCCGCATTGAAGATGTAATTTACGCGGATCAAGTAGCAAAAAACCCAGGGCAAGCTGGGAA GAAGAGGAGCCCTTCACAGTCGGAAACACCAGGTTCAGAGGATAAAGAGAGGACATCCATAGAGGCACCATCGGCCATGACACTATCGGACTTCATGGGT TGGGAAGGTGATCAAAACGATAACGACGACGAGGTAACAGGAACCACTGATGAAATGTTGAAAGAAGACAAGAAGCTCTCTGAGAAACTTGCTAATGTAG TGATGAGAAAGACATCGTATCTCGATAACCTGGTAGGTTCAAGAAGCCCAACCTCACGCCATTAA
AA sequence Show only first row Show all	>Lus10025797 pacid=23177494 polypeptide=Lus10025797 locus=Lus10025797.g ID=Lus10025797.BGIv1.0 annot-version=v1.0 MMVEEQEQQQQQQQQQHSRSSHGLRSRLFTHLKRIHIHDHSKTSSVDEFEPTIDSPIAEEHVTPPSNLTASASTSQDTSDTAATATNINDNKAPMEKSVP PPAMEKNQGNIFFSLFEMEQMKEKFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQWKLEPMSPQRKARWRREIGWMLSVTDHIVEFVASQQGN MEIMVTRQRTDLRMNIPALRKLDAMLIDCLDNFKDQSEFSYVSRDAPDSEKGPKRKEEKWWLPTAKVPTNGLSDASRKFLQYQKDCVNQVLKAAMAINAQ VLAEMEIPESYIESLPKNGRASLGDLIYKCITVEFFDPDQFLSTMELTSEHKILDLKDRIEASIVIWKRKMNQKDSKSGWGSAVSIEKREQFEERAETIL LIIKQRFPGIPQSSLEISKIQFNKDVGHAILESYSRILESLAHTVLSRIEDVIYADQVAKNPGQAGKKRSPSQSETPGSEDKERTSIEAPSAMTLSDFMG WEGDQNDNDDEVTGTTDEMLKEDKKLSEKLANVVMRKTSYLDNLVGSRSPTSRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	0	1
AT2G37195			unknown protein		Lus10026508 [exp]	3.2	0.8610
AT5G14240			Thioredoxin superfamily protei...		Lus10014596 [exp]	4.5	0.8266
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	7.7	0.8649
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	15.1	0.8034
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	15.5	0.7885
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10012806 [exp]	17.2	0.7732
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	25.4	0.7925
AT5G21050			unknown protein		Lus10001150 [exp]	27.1	0.8234
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	33.2	0.7969
					Lus10003030 [exp]	42.3	0.7589

Compare expression of checked genes

Lus10025797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.