Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52230 162 / 3e-52 PSAH2, PSAH-2, PSI-H PHOTOSYSTEM I SUBUNIT H-2, photosystem I subunit H2 (.1) AT3G16140 157 / 2e-50 PSAH-1 photosystem I subunit H-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035864 [exp] 231 / 3e-79 AT1G52230 209 / 1e-70 PHOTOSYSTEM I SUBUNIT H-2, photosystem I subunit H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052500 [exp] 174 / 1e-56 AT1G52230 161 / 8e-52 PHOTOSYSTEM I SUBUNIT H-2, photosystem I subunit H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03244 [flax] [poplar] PSI_PsaH Photosystem I reaction centre subunit VI
Representative CDS sequence Show only first row Show all	>Lus10025798 pacid=23177655 polypeptide=Lus10025798 locus=Lus10025798.g ID=Lus10025798.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTAGCAACTTTTGCAGGCGTACAGCCAGGAGTAGCAAGCATCAAAGGATTAGGAGGCAGCTCTCTTACTGGAACCAAGCTCCATTTGAAGA AGCCCTTTGGTCAGAGCTTCAGACGCAAAACCTCATCCAGGAGTATGACTGTGGAAGCCAAGTACGGAGATAAGAGTGTGTATTTTGATTTGGAGGATTT GGGGAACACTACTGGTCAATGGGACTTGTATGGCTCTGATGCTCCTTCTCCTTACAACCCACTCCAGAGCAAGTTCTTTGAGACATTCGCTGCTCCATTC ACCAAGAGAGGATTGTTGCTCAAGTTCTTGATCTTGGGAGGTGGTTCCACCATTGCTTACCTGGGTTCTACAGTCTCCGGTGATGTCCTGCCGATTGTTA AGGGTCCTCAACTTCCACCAAAGCTTGGGCCTCGCGGCAAGATCTAA
AA sequence Show only first row Show all	>Lus10025798 pacid=23177655 polypeptide=Lus10025798 locus=Lus10025798.g ID=Lus10025798.BGIv1.0 annot-version=v1.0 MASLATFAGVQPGVASIKGLGGSSLTGTKLHLKKPFGQSFRRKTSSRSMTVEAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPF TKRGLLLKFLILGGGSTIAYLGSTVSGDVLPIVKGPQLPPKLGPRGKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	0	1
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	1.4	0.9937
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	1.4	0.9935
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	1.7	0.9928
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	2.0	0.9915
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	3.5	0.9862
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	3.6	0.9691
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	4.5	0.9889
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	4.6	0.9828
AT4G16410			unknown protein		Lus10003907 [exp]	4.7	0.9760
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	4.9	0.9792

Compare expression of checked genes

Lus10025798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.