Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79820 342 / 1e-116 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT1G67300 283 / 4e-93 Major facilitator superfamily protein (.1.2) AT1G05030 152 / 2e-42 Major facilitator superfamily protein (.1) AT5G16150 151 / 4e-42 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G35740 95 / 9e-22 ATINT3 nositol transporter 3 (.1) AT1G08930 90 / 4e-20 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT4G16480 90 / 6e-20 ATINT4 inositol transporter 4 (.1) AT5G17010 89 / 6e-20 Major facilitator superfamily protein (.1.2.3.4) AT2G48020 88 / 1e-19 Major facilitator superfamily protein (.1.2) AT3G05155 85 / 7e-19 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035862 [exp] 394 / 4e-139 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10034930 [exp] 254 / 2e-81 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10009158 [exp] 145 / 9e-40 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 145 / 1e-39 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10030010 [exp] 144 / 2e-39 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10033568 [exp] 142 / 2e-38 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 140 / 7e-38 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 134 / 1e-35 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10028303 [exp] 86 / 1e-18 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185300 [exp] 365 / 3e-125 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 324 / 4e-109 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G060800 [exp] 150 / 5e-42 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 150 / 1e-41 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 115 / 5e-30 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.013G027700 [exp] 90 / 3e-20 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.018G085200 [exp] 88 / 2e-19 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.006G015200 [exp] 87 / 5e-19 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.013G027500 [exp] 86 / 1e-18 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.002G259900 [exp] 86 / 1e-18 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10025800 pacid=23177537 polypeptide=Lus10025800 locus=Lus10025800.g ID=Lus10025800.BGIv1.0 annot-version=v1.0 ATGAGAGGGCGTCACTTGGAGAACTCCTACTACACTTACAAGCGGCTTTCGTCCAAGGATTTCGTAGATGCGTACGAGGACAGAGAAGATGCCTCAGGTG GTGCTTTTATCGGATCACTCTTCAGTGGTTGGGTTGCAGATGGTGTTGGCCGCCGCAGGGCATTTCAGCTTTGTGCCTTACCAATGATAATCGGAGCTTC TATGAGTGCCACAACAAACAGTCTATGGGGCATGCTTCTTGGAAGGTTATTTGTTGGAACTGGAATGGGTCTTGGTCCACCAGTAGCTGCTCTTTATGTG GCAGAGGTTTCCCCAGCTCATGTAAGGGGTACTTATGGAAGCTTGACACAGACCGCAACATGTTTAGGACTTATGGGTTCTCTTTATATTGGGTTTCCAG CTAAGACGACTATGGGTTGGTGGCGCGTTTGCTTTTGGGTGTCTGTCATTCCTGCTGCATCTCTTGCTTTTCTGATGCAGTTTTGTGCGGAGAGTCCTTA CTGGCTTTTAAAGAGAGGACGTAGTGCTGAAGCTGAAGTTGCATTTGAGAAAGTATTAGGAGCGTTGCATGTGAAATCTGCTATGGGAGAATTGTCCAAG TCAGACCGAGGAGATGAAGTAGAAAATGTGAAGTTTACGGAGTTGCTCTATGGTCGTCATTTTAAAGGGTCTATAGTTGCCATGGTTTTGATGGATAGAC TGGGGAGAAAGGTGCTTCTCATTGGCAGTTTCTCTGGTATGGCAGTGTCGATGGGTATTCAAGCTATTGGAGCTACCTCGCTTGTGTCAAGCTCCCAGTC AGTGTATCTTTCAGTTGGAGGCATGTTGTTGTGA
AA sequence Show only first row Show all	>Lus10025800 pacid=23177537 polypeptide=Lus10025800 locus=Lus10025800.g ID=Lus10025800.BGIv1.0 annot-version=v1.0 MRGRHLENSYYTYKRLSSKDFVDAYEDREDASGGAFIGSLFSGWVADGVGRRRAFQLCALPMIIGASMSATTNSLWGMLLGRLFVGTGMGLGPPVAALYV AEVSPAHVRGTYGSLTQTATCLGLMGSLYIGFPAKTTMGWWRVCFWVSVIPAASLAFLMQFCAESPYWLLKRGRSAEAEVAFEKVLGALHVKSAMGELSK SDRGDEVENVKFTELLYGRHFKGSIVAMVLMDRLGRKVLLIGSFSGMAVSMGIQAIGATSLVSSSQSVYLSVGGMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	0	1
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	1.0	0.9447
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	3.2	0.9374
AT3G25290			Auxin-responsive family protei...		Lus10038225 [exp]	4.9	0.9301
AT4G37820			unknown protein		Lus10011571 [exp]	7.2	0.9014
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	9.2	0.9212
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	9.2	0.9190
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	9.9	0.9055
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	17.0	0.8819
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	21.6	0.9161
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	22.4	0.8911

Compare expression of checked genes

Lus10025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.