Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16170 466 / 1e-160 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT3G48990 77 / 8e-15 AMP-dependent synthetase and ligase family protein (.1) AT3G05970 73 / 2e-13 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT5G27600 68 / 9e-12 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT1G49430 64 / 2e-10 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT3G23790 53 / 4e-07 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) AT1G65060 49 / 4e-06 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT4G14070 49 / 1e-05 AAE15 acyl-activating enzyme 15 (.1) AT2G47240 45 / 9e-05 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G36880 44 / 0.0002 ACS acetyl-CoA synthetase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035861 [exp] 883 / 0 AT3G16170 643 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Lus10039232 [exp] 71 / 1e-12 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10029918 [exp] 70 / 2e-12 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 70 / 2e-12 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 68 / 1e-11 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 66 / 5e-11 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10008677 [exp] 54 / 2e-07 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10026143 [exp] 50 / 2e-06 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10016083 [exp] 47 / 2e-05 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185500 [exp] 528 / 0 AT3G16170 705 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 85 / 2e-17 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G105900 [exp] 74 / 8e-14 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G090200 [exp] 71 / 8e-13 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 66 / 2e-11 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.001G321800 [exp] 49 / 7e-06 AT3G23790 1016 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 47 / 2e-05 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.017G112800 [exp] 47 / 3e-05 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.014G140900 [exp] 46 / 6e-05 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.018G094200 [exp] 43 / 0.0003 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10025801 pacid=23177495 polypeptide=Lus10025801 locus=Lus10025801.g ID=Lus10025801.BGIv1.0 annot-version=v1.0 ATGGAGGTGGTGAAGTCAGTTTACAACCAAGGGGGGGAGGGGATTGCCATCAGCGCTGATCACAAGAGTTACAGTTATGCTCAGCTAGTTTCCTCTGCAT GGGAGATTTCTAATCTCTTGTGTAAAACTGGCTTGAAGCCTATTGATGGTGCTAGAGGTAATGGTCCTCTTGCTGGGGCACGGATAGGGATCGTGGCTAA ACCTTGTTTCGAGTTTGCTGCGGCAATATTGGCAACTTGGTTTAGTGGAGGTGTTGCGGTTCCTCTTGCAGTGAGCTACCCTGAGTCAGAGCTCTTACAT GTGATGAATGACTCTGGGATATCGATGGTGTTGAGTACGGAAGATTATCACCAAGTAATGGAAAAGGTTGCTTCCAAGTGTGCTGCTCAATTTTCGTTGC TTCCATCTGCAGCCAACATTTCTTCTGGGACAAGTGCAAATGATCTGAAAAATGTTGGAGAAATGGACGCTCTAAAAGGTGACGATCCAGCATTGATCAT CTATACAAGTGGCACAACTGGCAAGCCGAAAGGGGCGCTTCACACACACAGTAGTGTCAATTCACAGGTTGAGTTTATGCCAAAATTTAGCGTGAAAGGA GCCTGGCAGAGATGGCGAGAGTCATATCCAGAGAATGGAGGGAAATCTGAGGATGCTATAACAGTATTTACAGGAGTTCCCACTATGTATAATTGGCTAA TTCAAGGCTATGACTCGATGGACCCAGATTTACAAGCTGCCTCAGCCTTTGCTGCAAGACAGTTGAGATTGATGATGTGCGGTTCCTCTGCGCTTCCTGT TCCTGTCTTGCAACGGTGGGAAACAATCACTGGACAGCGCCTTTTGGAAAGATATGGCATGACTGAATTTGTCATGGCGATATCAAATCCCCTGAAAGGT ACACGGAAAGCAGGCACTGTTGGCCAACCACTTCCTAGAGTACAGGTCAAAATTGTACAAGATGAAAGTGACAATGATAATACGGGGGTGGGTGAGATTT GTGTCAAAAGCCCCTCACTATTCACGGAATATTGGAAGCTTCCACAGCACCCATTTGTGGGGGAATGTTGTGTCTTGGGATTGCCCGACAAAGACTTTGG AGATGCAGTTATTGCAATCATTGTACCGAATGACGAATGCAAGAAAAAACAGGAAGAAGAATCAAGCGATGCATTGACTTTGGAAGGCCTTCGTGAGTGG GCTAAAGACAAACTTGCACCATACAAGGCAAGTTACTCTCTTTGTCCTTTCTTTCTCTTGCCACACAAGAAACAAGAAAGCAAACCAAGTCTAAATATGC CTTCATTTTCGTTGCAGCTGCCTACCAAACTCTGCTTGTGGGAATCACTGCCCCGCAACGCTATGGGAAAGGTGAACAAGAAAGAACTGAAGAAAGTGCT TTCTCCTGAATAA
AA sequence Show only first row Show all	>Lus10025801 pacid=23177495 polypeptide=Lus10025801 locus=Lus10025801.g ID=Lus10025801.BGIv1.0 annot-version=v1.0 MEVVKSVYNQGGEGIAISADHKSYSYAQLVSSAWEISNLLCKTGLKPIDGARGNGPLAGARIGIVAKPCFEFAAAILATWFSGGVAVPLAVSYPESELLH VMNDSGISMVLSTEDYHQVMEKVASKCAAQFSLLPSAANISSGTSANDLKNVGEMDALKGDDPALIIYTSGTTGKPKGALHTHSSVNSQVEFMPKFSVKG AWQRWRESYPENGGKSEDAITVFTGVPTMYNWLIQGYDSMDPDLQAASAFAARQLRLMMCGSSALPVPVLQRWETITGQRLLERYGMTEFVMAISNPLKG TRKAGTVGQPLPRVQVKIVQDESDNDNTGVGEICVKSPSLFTEYWKLPQHPFVGECCVLGLPDKDFGDAVIAIIVPNDECKKKQEEESSDALTLEGLREW AKDKLAPYKASYSLCPFFLLPHKKQESKPSLNMPSFSLQLPTKLCLWESLPRNAMGKVNKKELKKVLSPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10025801 [exp]	0	1
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10035861 [exp]	8.2	0.8351
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	9.6	0.8976
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	23.1	0.8832
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	29.6	0.8775
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	29.9	0.8810
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	34.3	0.8475
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	42.3	0.8604
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	51.2	0.8581
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	53.2	0.8576
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	54.8	0.8608

Compare expression of checked genes

Lus10025801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.