Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 691 / 0 Major facilitator superfamily protein (.1) AT3G16180 642 / 0 Major facilitator superfamily protein (.1) AT1G69870 363 / 1e-117 NRT1.7 nitrate transporter 1.7 (.1) AT5G62680 362 / 5e-117 Major facilitator superfamily protein (.1) AT3G47960 346 / 1e-110 Major facilitator superfamily protein (.1) AT1G18880 342 / 2e-109 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G27080 341 / 2e-109 NRT1.6 nitrate transporter 1.6 (.1) AT1G68570 333 / 2e-106 Major facilitator superfamily protein (.1) AT5G11570 330 / 2e-106 Major facilitator superfamily protein (.1) AT1G62200 317 / 4e-100 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 1046 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 508 / 4e-174 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 395 / 5e-130 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 374 / 1e-122 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10036669 [exp] 359 / 8e-116 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 345 / 1e-110 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037221 [exp] 342 / 4e-109 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10017817 [exp] 341 / 9e-109 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 337 / 3e-107 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185700 [exp] 730 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 549 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 533 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 529 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 524 / 1e-180 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 520 / 4e-179 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 519 / 1e-178 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 518 / 3e-178 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 512 / 4e-176 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 510 / 4e-175 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10025802 pacid=23177671 polypeptide=Lus10025802 locus=Lus10025802.g ID=Lus10025802.BGIv1.0 annot-version=v1.0 ATGGAGGTTGATGATTACAACAACAACAACAACAACAACAAAGACAAGAAGATACAAGAGGTAGCTGCTGCTGCTGCTGCAGCGCCGCTCTCTGCTGATG ATAATGATGAAATTAATACTTCACAGAAGAAGCAGGGGGGTCTGATTACAATGCCATTCATCATAGCAAATGAGGCATTTGAGAAGGTGGCGAGCTATGG GCTGGCGCCGAACATGATAATGTATCTGATGAAAGATTACAGGATGGGAGTTGCGAAAGCAGCAAACATTCTGTTCCTATGGTCAGCCGCCACTAATTTC ACCCCGCTTCTCGGTGCTTTCTTCTCCGACTCCTTTCTGGGTCGCTACCTCACCATTACTCTCGGCTCCCTATTCAGCTTCCTGGGAACAATCTTGCTAT GGCTAACAGCCATGCTTCCACAAACAAAGCCTCCCCCATGCAACGTTACTGCTACTACTGCTGGTGGAAGCACCTGCTCGGATCCAACATCGGCTCAACT CGCTCTCCTCTTCTCGGCATTTGCTCTCATGTCGATTGGTGCCGGAGGCATTAGGCCTTGTTCCTTAGCATTTGGTGCTGATCAAGTTGATAACAGAGCA AACCCTGCTAAGAACAAAAGGATACTTGAGACTTTCTTTGGATGGTACTATGCCTCCACTGCTCTTTCTGTCTTGGTTGCCCTCTTTTTTGTCCCCCCCC CACCCATTGTCTACATCCAGGGCCGCCTCGGTTGGAGACTTGGTTTCGGAATCCCCGTTATCCTTATGTTCCTCTCAGCACTGCTCTTCGTTGTTGCTTC CCCATTCTATGTGAAGCATAAAGCTACCATGAGTTTCCTCACTGGTTTTGCTCAGGTGGTTGTTGTTGCTTACAAGAACAGGACACTCCCTTTCCCTAGT ACTGGAACTAGATCCTATCATTGCGGCAAAGGCTCCACCTTTCTTGCCCCTACCAAGAAACTAAGGTTCTTGAACAAAGCATGCATAGTTATCGACCATG ACAAAGACGTAGCCCCAGATGGAACAGCAACTAATCCGTGGAAGCTTTGCACAGTTCAGCAAGTTGAAGAGCTGAAAGCAATAATCAAAGTCATCCCTAT ATGGTCTAGTGGGATCATGTTGTCTATAAACACAAGCCAGACTTCATTTCCACTTCTCCAAGCTAGTTCTATGGACAGGCACCTTGCTTCTTCAGGGTTT CAAATCCCTGCAGCTTCCTATGCAATGTTCTTGGTCGTTACTATAGTAGTTTGGGTTGTTCTCTACGACCGAGCCATCCTTCCTCTCGCTTCGAAGCTCT GGGGGAGGCCAGTGAAGCTAAGCACAAAGCTCAGAATGGGGCTTGGCTTAGTGGTTTCATGTCTCAGCATGGTGGCTGCAGCAGCTGTTGAGCATGCTCG ACGAAGAAAGGCGATCCAAGAAGGGTACTTGAACAATCCAGTTGCTGTGGTGAACATGTCAGCAATGTGGCTTGTCCTGCAGTATGTGCTGCTCGGTCTT GCAGAATCGCTCAATGCGATCGGCCAGATCGAGTTTTACTACTCCGAGTTTCCTAAATCCATGTCGAGTATAGCTTCTTCGTTGTTCGGAGTCGGAATGG GAGTGGCGGGCTTGCTGTCAAGTGGTATTCTGAGTGCTGTGAATAAGCTCACTTCAAAAGATGGGAAGCAAGGTTGGATCAATGACAACATCAACCAGGC TCGTTATGATAACTACTACTGGCTTCTGGCTGTAATGGGGGTTGTGAATGTTGTCTACTTTGTGATCTGCAGTTGGGCCTATGGACCTTGTGAAGATGAA ATGACTAAAGTTGGGAATGAAGGAAATGGTGGTTTGAAGGAGGAAGAAGAAATAATGGGAAATGGAAGACATCATTTGGAAGAACAAGGTCGTTGA
AA sequence Show only first row Show all	>Lus10025802 pacid=23177671 polypeptide=Lus10025802 locus=Lus10025802.g ID=Lus10025802.BGIv1.0 annot-version=v1.0 MEVDDYNNNNNNNKDKKIQEVAAAAAAAPLSADDNDEINTSQKKQGGLITMPFIIANEAFEKVASYGLAPNMIMYLMKDYRMGVAKAANILFLWSAATNF TPLLGAFFSDSFLGRYLTITLGSLFSFLGTILLWLTAMLPQTKPPPCNVTATTAGGSTCSDPTSAQLALLFSAFALMSIGAGGIRPCSLAFGADQVDNRA NPAKNKRILETFFGWYYASTALSVLVALFFVPPPPIVYIQGRLGWRLGFGIPVILMFLSALLFVVASPFYVKHKATMSFLTGFAQVVVVAYKNRTLPFPS TGTRSYHCGKGSTFLAPTKKLRFLNKACIVIDHDKDVAPDGTATNPWKLCTVQQVEELKAIIKVIPIWSSGIMLSINTSQTSFPLLQASSMDRHLASSGF QIPAASYAMFLVVTIVVWVVLYDRAILPLASKLWGRPVKLSTKLRMGLGLVVSCLSMVAAAAVEHARRRKAIQEGYLNNPVAVVNMSAMWLVLQYVLLGL AESLNAIGQIEFYYSEFPKSMSSIASSLFGVGMGVAGLLSSGILSAVNKLTSKDGKQGWINDNINQARYDNYYWLLAVMGVVNVVYFVICSWAYGPCEDE MTKVGNEGNGGLKEEEEIMGNGRHHLEEQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	1.0	0.9563
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	2.2	0.8901
AT2G17550			unknown protein		Lus10035987 [exp]	6.2	0.8487
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	7.3	0.8726
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	7.7	0.8661
AT4G21500			unknown protein		Lus10011256 [exp]	8.5	0.8695
AT3G16330			unknown protein		Lus10038274 [exp]	8.7	0.8966
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	9.5	0.8892
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	10.0	0.8919
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	10.2	0.8779

Compare expression of checked genes

Lus10025802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.