Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65030 400 / 4e-140 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 45 / 3e-05 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 45 / 6e-05 transducin family protein / WD-40 repeat family protein (.1) AT1G10580 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 41 / 0.0008 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038299 [exp] 561 / 0 AT1G65030 456 / 2e-162 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 50 / 1e-06 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 49 / 4e-06 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10040449 [exp] 47 / 2e-05 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 45 / 6e-05 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10030869 [exp] 43 / 0.0003 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 43 / 0.0003 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001951 [exp] 42 / 0.0009 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107400 [exp] 456 / 2e-162 AT1G65030 441 / 3e-156 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 44 / 8e-05 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 42 / 0.0003 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 42 / 0.0004 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.015G049500 [exp] 42 / 0.0007 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 42 / 0.0008 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10025803 pacid=23177606 polypeptide=Lus10025803 locus=Lus10025803.g ID=Lus10025803.BGIv1.0 annot-version=v1.0 ATGAGTCTAATAGCAGGTTCCTATGACAGGTTCATATGGGGGTTCAAACTCAAGCCCGTAGCAGACCAGCAATCCATCTTATCCCTAGTTCCCCTCTTTT CCTACCCTTCCCACTTATCTCCCATCCTCACCACCGCCGCCTCCGGTCCGATCGCCGCCTCCGGATCCTCTGACGACACCATCCACCTCTACGACCTCCC TTCCGCCTCCTCTCTAGGACCCCTCCAGCAACACTCGGCTTCCGTAACTTCCCTCTCCTTCTTCACCCCTCCTTCCCTTTCCTTCCCCCGTAACCTAATT TCCGCCGACTCCGAAGGCTACGTTTGTATCTTCGATGCCGCCCCGTTTGTCCACCTCAAGACTGTGCGGGCCCATAAGAAGCAAGTCAACGACTTGGCCG TTCATCCCACTGGGAAATTGGCGCTTACTGTTGGAAGGGACGATTGTTTGGCGATGTTGAACTTGGTGAGGGGTAGGAGGAGTTTCTATTGTAGGCTTGG GAAGGAAGCTAGTCTGGTGAGGTATGATCTGGCCGGAGACAAGTTTTTCATGGCCACAGAGGATAAAGTCGGGGTTCATGAAGCTGAAGATGCCAAGCTA GTGACTGAGTTTCAGTGCCCTAAAAGGGTTCTGTGTGCTGCCCCTGGAGAGAATGGACTTCTATTCACTGGTGGTGAAGACCGGAATATCACTGGATGGG ACTGCAACAGCGGGAAGGTTGCCTACTCCATTGAAGGTGCTCATGAGTCCCGTGTCAAAGGTATTGTTCTGCTAACTAGGAACGATGGGGGTGTTGATGA CCCCTATTTGTTAGCATCAGCGGCTTCAGATGGGGTGATACGTGTATGGGATGTCCGTACGTCCACTAAGGAAAAGGCAAGTCCGTTAGCTGAGGCTAAA ACAAATGCGAGGCTGACCTGTCTTGCTGGATCATCTATAAAATGTAAGCGACCACTTCCTTCTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10025803 pacid=23177606 polypeptide=Lus10025803 locus=Lus10025803.g ID=Lus10025803.BGIv1.0 annot-version=v1.0 MSLIAGSYDRFIWGFKLKPVADQQSILSLVPLFSYPSHLSPILTTAASGPIAASGSSDDTIHLYDLPSASSLGPLQQHSASVTSLSFFTPPSLSFPRNLI SADSEGYVCIFDAAPFVHLKTVRAHKKQVNDLAVHPTGKLALTVGRDDCLAMLNLVRGRRSFYCRLGKEASLVRYDLAGDKFFMATEDKVGVHEAEDAKL VTEFQCPKRVLCAAPGENGLLFTGGEDRNITGWDCNSGKVAYSIEGAHESRVKGIVLLTRNDGGVDDPYLLASAASDGVIRVWDVRTSTKEKASPLAEAK TNARLTCLAGSSIKCKRPLPSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65030			Transducin/WD40 repeat-like su...		Lus10025803 [exp]	0	1
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	9.9	0.8457
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10026848 [exp]	13.7	0.8094
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	15.7	0.8407
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	16.0	0.8383
AT4G11630			Ribosomal protein L19 family p...		Lus10017958 [exp]	16.7	0.8338
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	17.0	0.8383
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	23.3	0.8324
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	25.6	0.8344
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	25.6	0.8355
AT2G35790			unknown protein		Lus10040379 [exp]	28.6	0.8274

Compare expression of checked genes

Lus10025803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.