Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22900 105 / 2e-28 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 99 / 2e-26 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 96 / 6e-25 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 93 / 6e-24 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 85 / 7e-21 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G58090 86 / 1e-20 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 83 / 6e-20 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 79 / 3e-18 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G38700 76 / 4e-17 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 75 / 7e-17 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038298 [exp] 326 / 6e-116 AT5G42510 118 / 9e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021083 [exp] 102 / 1e-27 AT1G22900 150 / 5e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016231 [exp] 102 / 2e-27 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021084 [exp] 99 / 5e-26 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029312 [exp] 91 / 3e-23 AT3G13660 135 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 87 / 2e-21 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 85 / 8e-21 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 84 / 2e-20 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10018340 [exp] 84 / 3e-20 AT1G58170 129 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 94 / 3e-24 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.008G061400 [exp] 94 / 3e-24 AT2G21110 223 / 7e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 90 / 1e-22 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 88 / 5e-22 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 88 / 7e-22 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 86 / 6e-21 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.006G195300 [exp] 84 / 1e-20 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 83 / 6e-20 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G130900 [exp] 82 / 1e-19 AT2G21110 185 / 5e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 82 / 2e-19 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10025804 pacid=23177501 polypeptide=Lus10025804 locus=Lus10025804.g ID=Lus10025804.BGIv1.0 annot-version=v1.0 ATGGCTTCCAATCTCTTCCTCTCCATCCTGACCCTCTCCGTTCTTTACATCGCCTATACTTTCCCAAGACACGACCATCACCAACCCAAGTCAACCAACC TTGTCGTCTACGTCCATGACAAGTTCACCGGCGCGGAGGCTACTGCAGTGACGGTCGCCGGGAAACAGGATGAGCCCGCATCAGCCGCCTTCAATATCCT GCGATTCGGGTCAGTGGCCGTAGTGGACGATCCAGTAACGGATGGCCCCACAATCGAGTCGAACGAAATCGGCAGGGCCCAGGGAGCATACATAAATTCG CAGATGGACGGGAAGGGGCTGTATTTGGTGTTCTCCGTCATTTTCACCGGCGGGGAATTTAAAGGGAGCACGCTGGAGATACAAGGGTCTGATATTTTCT CGATGAAGGAGAGGGAGTTTGGGGTAGTTTCGGGGACGGGTTATTTCAGATTTGTGAAAGGGTATGGGATCATGGAGACGGCGTTCATGGATGTTGCTAA TCTTAGTGCCATTATCAAGCTTAATGTCACTGTTAAACATTACTAA
AA sequence Show only first row Show all	>Lus10025804 pacid=23177501 polypeptide=Lus10025804 locus=Lus10025804.g ID=Lus10025804.BGIv1.0 annot-version=v1.0 MASNLFLSILTLSVLYIAYTFPRHDHHQPKSTNLVVYVHDKFTGAEATAVTVAGKQDEPASAAFNILRFGSVAVVDDPVTDGPTIESNEIGRAQGAYINS QMDGKGLYLVFSVIFTGGEFKGSTLEIQGSDIFSMKEREFGVVSGTGYFRFVKGYGIMETAFMDVANLSAIIKLNVTVKHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	0	1
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	2.4	0.9021
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	3.5	0.8922
AT5G65960			GTP binding (.1)		Lus10016687 [exp]	5.7	0.8716
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	9.5	0.8806
AT5G25265			unknown protein		Lus10041028 [exp]	10.8	0.8615
AT4G33380			unknown protein		Lus10009765 [exp]	14.3	0.8651
					Lus10033509 [exp]	14.8	0.8733
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	15.3	0.8461
AT1G54120			unknown protein		Lus10008114 [exp]	16.0	0.8446
AT1G27385			unknown protein		Lus10015781 [exp]	16.7	0.8700

Compare expression of checked genes

Lus10025804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.