Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27750 184 / 2e-58 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT5G09320 77 / 5e-16 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT1G62350 44 / 2e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038297 [exp] 477 / 1e-173 AT3G27750 182 / 2e-57 EMBRYO DEFECTIVE 3123, unknown protein Lus10040756 [exp] 52 / 8e-08 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036049 [exp] 47 / 5e-06 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000892 [exp] 45 / 1e-05 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051400 [exp] 239 / 9e-80 AT3G27750 171 / 2e-53 EMBRYO DEFECTIVE 3123, unknown protein Potri.009G169600 [exp] 86 / 6e-20 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.007G134300 [exp] 50 / 4e-07 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.001G275000 [exp] 44 / 4e-05 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025805 pacid=23177629 polypeptide=Lus10025805 locus=Lus10025805.g ID=Lus10025805.BGIv1.0 annot-version=v1.0 ATGGCGGCGTCTTCGTCATCTCTTCGATCGACCTTCACTAATCTCCCCCTCTTCTCCGTCAAACCCTGCCCCAAAACCCGAAAACCTTCCGCCACTTTCA CTCCCGTCCGATGCGGCCCGCGCTCCAATCGCGGCCCTCTCATGAAAGGCCGAATCCTAAGCACAGAAGCAATCCACGCCATCCAGTCCCTGAAACGCGC GTACCGCACCTCCAAACAACCGAACATCCCCAACCTCACGCGCCTCCTCAAGCCCGACCTAGTCTCCGTCCTCCGCGAGCTCCTCCGACAAGACCTCTGC CACATCGCTCTCAGCGTCTTCTCCGTCTTGCGCTCAGAGTTCCCAGACCAGACAACCGACTTGAATCTCTACGGCGACGCCATCTTCGCGCTGCTAAAAA ACGGAATGATTGACGAAATCGAAAGCCTGGTCGCAGAGCTGGACGCGGCGGCGGAGGAAGGTAAGATCGAGTGGGAGCGCGATACCGGGACGGTGAGAGT TGTGAAAGGAGTGGTGGAGGCCGGGAGGAAAGAATCGACGGTCAGGATGGTGAAAATGCTGAGGAGGAGTGGGTGTGGGGACACGTGGTCGGCGGATGAG TATGCGGTTAAGTATTTGAGTAAAGGGCTGAGGAACGTAGGGGAAGATGAATTAGCTGCAGAGATAGATGTGGAATTTTTGAGGGTTTGCCAAACTGGTA ATGTGGTGAAGTTAGCCCTTTAA
AA sequence Show only first row Show all	>Lus10025805 pacid=23177629 polypeptide=Lus10025805 locus=Lus10025805.g ID=Lus10025805.BGIv1.0 annot-version=v1.0 MAASSSSLRSTFTNLPLFSVKPCPKTRKPSATFTPVRCGPRSNRGPLMKGRILSTEAIHAIQSLKRAYRTSKQPNIPNLTRLLKPDLVSVLRELLRQDLC HIALSVFSVLRSEFPDQTTDLNLYGDAIFALLKNGMIDEIESLVAELDAAAEEGKIEWERDTGTVRVVKGVVEAGRKESTVRMVKMLRRSGCGDTWSADE YAVKYLSKGLRNVGEDELAAEIDVEFLRVCQTGNVVKLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	0	1
AT1G67050			unknown protein		Lus10028485 [exp]	1.4	0.8767
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	2.2	0.8302
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	3.9	0.8350
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	4.0	0.8408
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	5.2	0.8121
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	6.9	0.7944
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	7.1	0.8040
AT1G67050			unknown protein		Lus10009160 [exp]	11.2	0.8205
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	13.4	0.8004
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	16.1	0.8022

Compare expression of checked genes

Lus10025805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.