Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038294 [exp] 394 / 2e-136 ND 42 / 4e-04 Lus10038295 [exp] 204 / 3e-63 ND 37 / 0.005 Lus10025806 [exp] 208 / 2e-62 ND 40 / 0.002 Lus10037541 [exp] 97 / 5e-23 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10025781 [exp] 86 / 2e-19 ND / Lus10025782 [exp] 77 / 5e-15 ND / Lus10037542 [exp] 74 / 5e-15 ND / Lus10011452 [exp] 73 / 4e-14 ND / Lus10037540 [exp] 58 / 2e-09 ND 40 / 7e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 57 / 6e-09 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G195000 [exp] 51 / 5e-07 AT1G02550 76 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 46 / 2e-05 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 44 / 0.0001 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G209800 [exp] 40 / 0.0007 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10025807 pacid=23177661 polypeptide=Lus10025807 locus=Lus10025807.g ID=Lus10025807.BGIv1.0 annot-version=v1.0 ATGGATATCTCAAGGAAATCAACGATATTCCTCATTTTCATCCTCACCATCACTCTTTCATCTCTTCTCCCCATCTCCATCTCACATGAATCCCCATCTC CGTCCCCTTCTTCCGATGACGTGTCATCATCCTCGCCATCATCGGATGCAGACTCCCCTTCTTCGTCACCTTCCGGTGATGCCGTGTCATCATCCTCACC ATCCATCTCTCCATCATCATCCTCATCAGATGCGTCGTCTACATTAACCACGTCCCCATCATCCTCCCCTTCCTCCGGCGATGACGTGTCATCATCGTCT CCCTCCTCCGGCGATGACGTGTCATCATCGTCCCCCTCCTCCGGCGATGCCGTGTCATCATCGTCGTCCCCCTCATCCGGCGATGCTGTGTCATCATCGT CGTCCCCCTCCTCCGGTGATGACGTGTCATCATCATCATCATCACCATCCATGTCCACGTCCACGTCCACGTCATCCTCCTCTGGCGGAACGGATTCCTC CTCCACAAGTACTACTACTAGTACTACTAGTTCTAGTAGCGAGTCATCATCATCATCCTCCTCTGATGGGTCATCTGCACCGGCACCTTCACCGGACTCA TCGTACCCATCATTCCCGACGATGTTCTCAACCAAATTCGAGAGGAGGATGGAAGAAGTCGAGAGCGGGTTGTCGATGAGAACCAACCCGACCAACTTGG TGAAAGAGCTATGTTCAGGAGCCGAGAACCCAGGAAAGTGCATGGAGTTCTTCCGCGACTCGCGCTCCGACGACCCAGCGGAGATCATCGCGACCGAGAT CGGGACGCTGAAGACGCTGGTCAAGGAAGGAATCTCCGCCGCCACCAAGGTGAGGAGCAGGCAAGACGGCAGCGAGGCGGTGACCCATTGCTTGGACGTG TGTCTCGAGAATTACGACAAGGCGATGTCCAACCTGGACAAAGCGACGGCCACGTGTTCGAGATGTATTCGTTCCAACCCGAAGTGCACACCTAAGGAGA CCGGCGAGGTCAAGACAATGCTTAGCGCTGCCATCTCTAACGTTGGGTTCTGCGACGAGTCGTTTAACGCGCAGGGGCTTCCTGACCCGCCGATGAAGGC CACCAACGATGCTGTTGTCGAGTTGACCGATTGGCTTTTGGAGTTCTGTAAGAAGTTGGACCAGAAGTACTAA
AA sequence Show only first row Show all	>Lus10025807 pacid=23177661 polypeptide=Lus10025807 locus=Lus10025807.g ID=Lus10025807.BGIv1.0 annot-version=v1.0 MDISRKSTIFLIFILTITLSSLLPISISHESPSPSPSSDDVSSSSPSSDADSPSSSPSGDAVSSSSPSISPSSSSSDASSTLTTSPSSSPSSGDDVSSSS PSSGDDVSSSSPSSGDAVSSSSSPSSGDAVSSSSSPSSGDDVSSSSSSPSMSTSTSTSSSSGGTDSSSTSTTTSTTSSSSESSSSSSSDGSSAPAPSPDS SYPSFPTMFSTKFERRMEEVESGLSMRTNPTNLVKELCSGAENPGKCMEFFRDSRSDDPAEIIATEIGTLKTLVKEGISAATKVRSRQDGSEAVTHCLDV CLENYDKAMSNLDKATATCSRCIRSNPKCTPKETGEVKTMLSAAISNVGFCDESFNAQGLPDPPMKATNDAVVELTDWLLEFCKKLDQKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025807 [exp]	0	1
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	1.7	0.9937
					Lus10019223 [exp]	3.0	0.9909
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	4.5	0.9879
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	12.0	0.9750
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	14.4	0.9916
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	20.5	0.9767
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10018836 [exp]	20.6	0.9330
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10038687 [exp]	22.5	0.9122
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	26.4	0.9867
					Lus10017783 [exp]	28.9	0.9867

Compare expression of checked genes

Lus10025807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.