Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16250 204 / 9e-67 PnsB3, NDF4 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1) AT4G32590 78 / 5e-18 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038292 [exp] 384 / 1e-137 AT3G16250 227 / 9e-76 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1) Lus10041038 [exp] 91 / 9e-23 AT4G32590 177 / 4e-57 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4) Lus10006189 [exp] 53 / 1e-08 AT4G32590 119 / 8e-35 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186800 [exp] 213 / 3e-70 AT3G16250 203 / 8e-67 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1) Potri.006G247300 [exp] 78 / 9e-18 AT4G32590 190 / 2e-62 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10025809 pacid=23177656 polypeptide=Lus10025809 locus=Lus10025809.g ID=Lus10025809.BGIv1.0 annot-version=v1.0 ATGGGGAGTCTCCAATTCAACTCTACTTGTTACTACAGCTGCTACAACAGTAGAACTACTAGTACTACATTCAGTGCTTTTTCCGCTAAGAACATCATCA AACTGAATGGCTGCTGCAGCTTCAGTAGCACTGCTAGAGCAGGTCCAAGCAGAAGAAGGATAAGGCCAGCAGCAGTCTTAACTAACCCTGATCAGCAGGA GAGCACCCCAGTAGAGCAGGATACAGAAGAAGATGATGACGGACCACCTTCTGTGATCATAGCATTCGTCCATTCAGTGTTGCTGCCGGATGGAACACCG GATTTGCATATGAGGATAGCCACCGGAGGTCAGAAGCTCAGGGATATCATGTTGGATACTAATATTGAGCTCTACGGTCCCTATGAGAAGCCTCTGTCCA ACTGTGCTGGTGGTGGAACTTGTGCTACTTGCATGGTTGAGGTTATACAGGGGAAGCAGCTTCTCAACCCTCGGACTGATAAAGAGAATGAGAAACTTAA GAAGAAACCCAAAAATTGGAGACTTGCCTGCCAAACCACAGTTGGAACACCAGAATCCAGAGGGCTGGTTGTGATCCAGCAATTACCAGAGTGGAAAGGT CATGAATGGGCTTACGAGAAAATCTTGCCTCCTGAGTTCCAAACCGAACAATAG
AA sequence Show only first row Show all	>Lus10025809 pacid=23177656 polypeptide=Lus10025809 locus=Lus10025809.g ID=Lus10025809.BGIv1.0 annot-version=v1.0 MGSLQFNSTCYYSCYNSRTTSTTFSAFSAKNIIKLNGCCSFSSTARAGPSRRRIRPAAVLTNPDQQESTPVEQDTEEDDDGPPSVIIAFVHSVLLPDGTP DLHMRIATGGQKLRDIMLDTNIELYGPYEKPLSNCAGGGTCATCMVEVIQGKQLLNPRTDKENEKLKKKPKNWRLACQTTVGTPESRGLVVIQQLPEWKG HEWAYEKILPPEFQTEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	0	1
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	1.7	0.9673
AT1G49975			unknown protein		Lus10006137 [exp]	2.0	0.9630
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	2.4	0.9539
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	2.8	0.9557
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019771 [exp]	3.9	0.9408
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	4.6	0.9559
AT5G15802			unknown protein		Lus10022232 [exp]	4.7	0.9438
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10002286 [exp]	4.9	0.9437
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	5.3	0.9492
AT5G37360			unknown protein		Lus10004762 [exp]	5.5	0.9443

Compare expression of checked genes

Lus10025809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.