Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16260 1034 / 0 TRZ4 tRNAse Z4 (.1) AT1G52160 950 / 0 TRZ3 tRNAse Z3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038290 [exp] 1597 / 0 AT3G16260 1122 / 0.0 tRNAse Z4 (.1) Lus10038291 [exp] 433 / 4e-146 AT3G16260 215 / 6e-64 tRNAse Z4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186900 [exp] 1208 / 0 AT3G16260 1148 / 0.0 tRNAse Z4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10025810 pacid=23177504 polypeptide=Lus10025810 locus=Lus10025810.g ID=Lus10025810.BGIv1.0 annot-version=v1.0 ATGCCACCATATATCTCCGGACTTCGTCTTCTCTTCTCCCCATTAAACCCTTCTCCTCTTCTTTTCTCCAATTGCTCAACTATTTCTAGGTTCAGGCACC GCTCTTTCTTCCCCATCCTCTCTTCTTCTTATTCTCAACCTCCTCACAGAAGGCAGCGATCTTCTTCCGTCCCCAACCGTCGCCGCCAGCAGCAGCCATT CAATTTAAGGGACAGAGGGAACAGCACCTTAACTGATATAAAGAACACGGATACTAATCACAAGGAAGGAGCAGCTTCGATGGATCAGAATCAAACTCTT CCTGGGTTTAATAAGAGAAGAGCCGAGGGTAGAGATAAAAGTGACAGACCTAAGAATCTTCAGTTGAAAGTTCGCAAATTGAATCCCACTAACACCATCG CTTATGTCCAGATTCTTGGAACAGGAATGGACACTCAGGATACTTCACCTTCAGTTTTGCTCTTCTTTGACAAGCAAAGATTCATTTTTAATGCTGGCGA GGGATTGCAACGATTCTGTACAGAACATAAGATCAAGCTATCCAAGTTGCTTAGCATTTTCACTTTCCCTCCAGGACTGTTGTTGACTATGGCTGGCATC GGAGATCAGGGAATGTCGGTTAATTTGTGGGGTCCTTCAAATCTGAAGTACTTGGTCGATGCAATGAAGTGTTTTATCCCACATGCTGCCATGGTGCACA CAAGAAGTTTTGGTTCTGATGCGCCCTCACAATTGGACGCAAAGGTATCAATGAAGCCTATTGTGCTTGTTGATGATGAGGTGGTTAAAATATCAGCACT TCTACTTCGACCACAAGGCTCAGAAGTAGCTGAAGTCAAGCCAGGCGATATATCAGTGATATATATCTGCGAACTGCCTGAGATTATGGGCAAATTTGAC CCTGGAAAGGCCAAAGCCCTTGGTTTGAGAGCCGGACCAAAATATGGTGAACTCCAAAAGGGGAAATCTGTGATGTCAGATCGTGACAATATCATGGTGG GTCTAACCTCTGGAAAAAGATATATCCACCCAAGTGATGTAATGGGTCCTCGTGTTCCTGGTCCTATTGTATTCCTTGTTGATTGTCCCACTGAGGCTCA TGTACAAGATCTATTGTCAACAGAATCTCTCGAAAGTTATTGGACAGGTAGCTCTGGTAATTTACCTGAAGGTGATAAGATTGTAAATTGTATTGTTCAT TTAAGTCCAGCATCTGTGGTAAGCAGTCACAGTTATCAGAAATGGATGAGGAAATTCAGTTCAGCTCAGCAAATTATTGCCGGGCATCAAACCCGAAATG TGGAAATCCCTATTCTTGAATCCAGCGCCAGGGTTGCAGCACGTCTAAACTACTTGTGTCCTCAATTCTTTCCGGCTCCTGGATTCTGGTCCCTGCAAGA CCTAAACAACAAAACAACAGAGTCTAGCTTCTCCGGCGAGTTCACGCTGCGTCCTCATGCTCAACTTGGGTTGGACAAGGCAAATATTCCAAGTAATGAG ACTTCATCAGAAGTCATAGACGCATTAATAACAGAGATCCCAGAGATAGTGGATGCTGCCAAACATGTTGGCCAGTTCTGGGATGAACCTGGAGGAACGG GCTTGAACCTGTTGCAAGATGACAACACTATGACGGAAGAACCTTGGTTAGAAGTAAAAAGAATACCTAGTTGCTTAGATAATGTAAGGAGAGATGATCT AGAGATAGTCCTTCTGGGGACTGGTTCATCCCAGCCTTCAAAGTACCGTAATGTCACTTCCATCTACATCAATCTCTTTTCCAAAGGAAGTTTGCTGCTA GATTGCGGTGAAGGAACCCTGGCACAATTGAAAAGAAGGTATGGCGTGGAGGGCGCTGATAATGCAGTAAGAAATCTGAGTTGTGTCTGGATTTCTCATA TCCATGCTGATCATCATACAGGATTAGCAAGAATTCTAGCTCTACGGCGAGAACTCCTACAAGGCACAGTTCACGAGCCATTACTCGTTGTGGGACCAGC AATGCTTAGGAGGTTTCTTATTGCTTATCAAAATCTTGAAGACCTGGATATGGAGTTCCTTGATTGCAGGAGCACAACAACAGCTACATGGGATGATTTT GAGCGCAACAATGGTGAATTCATGGATCAGTCATCAACAGATACCCAGTCGACACTCTTTGCGAACACTAACCGGATGCAAAGCTACTGGAAAACGCCAG GGAGTCCAATTGACAAGGGCAGGTACTTCCCACTTCTAAAGAAGCTGCAGAAAGTTCTGAAAGAAGCAGGGTTGGAATCTTTGATTAGCTTCCCAGTCGT GCATTGCCCTCAGTCTTTTGGCGTGGCGCTGAAAGCTGCAGAAAGAGTGAACAATGTTGGGAAAGTGATCCCGGGATGGAAGATTGTGTACTCGGGCGAC ACTAGGCCATGCCCCGAACTGGAGGAGGCATCTCGTGAAGCGACAGTTCTCATACACGAGGCAACCTTTGAAGATGGGTTAATGGAAGAAGCGGTAGCTA AAAACCACAGCACAACCAAGGAAGCCATCGAAGTTGGAGACAAAGCGGGAGCATACCGTATAATCCTGACACACTTCAGCCAGAGATATCCAAAGATTCC ACTGTTTGATGATGCCCATATGCATAAAACATGCATAGCATTCGATTTGATGAGTGTTAACTTGGCAGACCTGCCTGTCCTCCCGAGTGTTCTTCCTTAC CTTAAATTGCTCTTCAAAGATGATTTGGTTGTTGATGAACCAGATGACGATGATGTTCCTGAACAAGCTGCTGCTGTTGTTGCCTAA
AA sequence Show only first row Show all	>Lus10025810 pacid=23177504 polypeptide=Lus10025810 locus=Lus10025810.g ID=Lus10025810.BGIv1.0 annot-version=v1.0 MPPYISGLRLLFSPLNPSPLLFSNCSTISRFRHRSFFPILSSSYSQPPHRRQRSSSVPNRRRQQQPFNLRDRGNSTLTDIKNTDTNHKEGAASMDQNQTL PGFNKRRAEGRDKSDRPKNLQLKVRKLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKLLSIFTFPPGLLLTMAGI GDQGMSVNLWGPSNLKYLVDAMKCFIPHAAMVHTRSFGSDAPSQLDAKVSMKPIVLVDDEVVKISALLLRPQGSEVAEVKPGDISVIYICELPEIMGKFD PGKAKALGLRAGPKYGELQKGKSVMSDRDNIMVGLTSGKRYIHPSDVMGPRVPGPIVFLVDCPTEAHVQDLLSTESLESYWTGSSGNLPEGDKIVNCIVH LSPASVVSSHSYQKWMRKFSSAQQIIAGHQTRNVEIPILESSARVAARLNYLCPQFFPAPGFWSLQDLNNKTTESSFSGEFTLRPHAQLGLDKANIPSNE TSSEVIDALITEIPEIVDAAKHVGQFWDEPGGTGLNLLQDDNTMTEEPWLEVKRIPSCLDNVRRDDLEIVLLGTGSSQPSKYRNVTSIYINLFSKGSLLL DCGEGTLAQLKRRYGVEGADNAVRNLSCVWISHIHADHHTGLARILALRRELLQGTVHEPLLVVGPAMLRRFLIAYQNLEDLDMEFLDCRSTTTATWDDF ERNNGEFMDQSSTDTQSTLFANTNRMQSYWKTPGSPIDKGRYFPLLKKLQKVLKEAGLESLISFPVVHCPQSFGVALKAAERVNNVGKVIPGWKIVYSGD TRPCPELEEASREATVLIHEATFEDGLMEEAVAKNHSTTKEAIEVGDKAGAYRIILTHFSQRYPKIPLFDDAHMHKTCIAFDLMSVNLADLPVLPSVLPY LKLLFKDDLVVDEPDDDDVPEQAAAVVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	0	1
AT2G44640			unknown protein		Lus10043347 [exp]	1.0	0.9450
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	1.4	0.9432
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	1.7	0.9192
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	3.5	0.9171
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	4.6	0.8870
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	5.1	0.8789
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	6.0	0.9068
AT2G44640			unknown protein		Lus10019499 [exp]	7.1	0.9064
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	8.1	0.9111
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	10.6	0.8988

Compare expression of checked genes

Lus10025810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.