Plant FIBer expression Database

Lus10025811 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16270 667 / 0 ENTH/VHS family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038289
[exp]
538 / 0 AT3G16270 377 / 2e-122 ENTH/VHS family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G187000
[exp]
755 / 0 AT3G16270 792 / 0.0 ENTH/VHS family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0009 ENTH_VHS PF01417 ENTH ENTH domain
Representative CDS sequence
>Lus10025811 pacid=23177497 polypeptide=Lus10025811 locus=Lus10025811.g ID=Lus10025811.BGIv1.0 annot-version=v1.0
ATGGATTCCAGCAGGAGAGCGGTTGAGTCGTACTGGAGATCCAGGATGATCGACGGGGCGACTTCTGACGAAGATAAGGTTGCTCCCGTCTACAAATTGG
AAGAGATTTGTGATCTCTTGCGCTCTTCTCATGTTAGTATCGTCAAGGAGGTGTCCGATTTCATTTTGAAGAGGCTCGATCATAAGAGTCCCGTTGTTAA
ACAGAAGGCTCTCAGATTAATAAAATATGCTGTGGGAAAGTCTGGAGCGGAGTTCAGGAGGGAAATGCAAAGACATTCTGTGGCTGTACGTCAGTTACTT
CACTACAGAGGGCAGCCGGATCCTTTGAAGGGAGATGCCCTGAATAAGGCCGTGAGAGATACAGCTCAGGATGCTATTTCTGCAATTTTTTCCGAGGAGA
ACAGTAAGCCAGCACCAGCACAACTCACTAAGCGTATGGAAGGATTTGGAAACACGAATTTTGAAATGCGATCTGAAGATAAGAAGTCCTTTGACTCCTT
TCTTAGTGAGGTAGTTGACATAGGAAGTGCAACTATCAAGCAGGGACTTAGTAGCTTGACTCAAGGGAATCCGCAAAGAATGAATGATCCTGGGAACTAC
AGAAGCCCAAATCTTCACCGGTCATTGACTGATGACCGTGATAGTTCAGATAGATATGAGCCAGTACAGTTGCGTAATGACAACCATGGAAGTTTTGGGG
GTTCAAGAGCTTCGACTGGAGGATCATGGGGCCAGGATTTAAGATCAGCAAATGCTACAATAGAAAATGGGAACTCTAGTTCCAGCAATGCGGGGAGCAA
GACTCGAGAGGAAAGGTTGCTAGAGACCATTGTGACGTCGGGTGGTGTACGATTACAACCTACCAGAGATGCAATTCATGTTTTTCTAGTGGAAGCAGCA
AAACTGGATGCATTGGCTTTGAGTCGAAATTTTTCAGTTGATGTGCTTGTATACAATTGCTTCTTCTTTCTGTCGAAGGTGAATATCTCATATGGTCTAC
CTGTTCATATCCTCTATTTTGGATGCTTCACATATTCCCAGGTTCGCATGAAAGCAGTTTGTGTGCTTGAGTCAGTTCTAAGAAAAAAGGATGACGAGAA
GTTTTCAATTATAGCTTCTTACTTCGATGACAATATAGAAGCAGTGGAGAGATGCTCTGAGTCTCCTCAAAGTTCTCTCAGTGAAAAGGCTAGGAAGGTA
TTGAGCCTTTTGGATGGTGGAAAGGCAGGTGGCATTGCAAGTAACTCAGGGAAGTCAGTGACTGCTGTTTCTCCCGTTCAGATTCCTGACTTAATAGACA
CAAGGGAGTCGGATGATTTCTTGAAAGCAGATGATCCTACTGAAATGTTAAATGATCAAGGGATATCAAATGTTCCAGCAGCTTCTCCTTTCACTCACGA
TTTACTGGGAGAGAGTTTGGGTTCCGGTGAGAACTCTACAGAACAAAAGAATGAGGATGACCCTTTTGCTGATGTCTCGTTTCACTCGGGAGAGTCAACC
GCACAAGCTTCTGATCTCTTTTCCGGAATGAACTTTGACCAAAAACAAAGTTCGGATGAAAATCAAGTAGCTGCAAACGGACCTGAGATATTTGATATAT
TTGGATCCGGTAGCACTCTGAAAAGCAGTCAAGAAAAACCAGCAGTTAATGATTTACTTGCTGGTATGTCCATTAGTGAAGGTGTGAAGCAGCAAGTGAG
CTCACCATCTATTCAATTTGAAGGTACAACCTCAGACCTCAGCCAACAAGTCTCGAACGATGGTTTGAAAAACATGGTAGGGGGATCGCAGCTGGGCATG
ATGAATGGAAGTAGTATGTATCCTTCTTCTGCAATGCAGTATGGTATGCCTCCTGGCATGATGTTGAATCCTGCTTTGGCTGGTCAATCAATACCGCTAA
ATTACGGTGCTATGGGAGGGTTCCTTACTCAGCAGCAACTTCTTGCTGCAATGTCCAACTTCCAACAGTTGAGCAATTTGAATGCCCAGAATTATAGCCA
GGGTAATGCTAGTCAAGCAAACGGGAGCAGTTCAGCACTTCCTGACATATTCCATCCGAGCTTTCCTAATCAAAGTCCTACATCGATGATGAGCAGCTCA
AAGAAAGAAGAGAGCAAAGCATTTGATTTCATCTCAGTGAGCTCCAATCTTAAGACCCTGAATTCTTTTGCGCCTCCGTTGTAA
AA sequence
>Lus10025811 pacid=23177497 polypeptide=Lus10025811 locus=Lus10025811.g ID=Lus10025811.BGIv1.0 annot-version=v1.0
MDSSRRAVESYWRSRMIDGATSDEDKVAPVYKLEEICDLLRSSHVSIVKEVSDFILKRLDHKSPVVKQKALRLIKYAVGKSGAEFRREMQRHSVAVRQLL
HYRGQPDPLKGDALNKAVRDTAQDAISAIFSEENSKPAPAQLTKRMEGFGNTNFEMRSEDKKSFDSFLSEVVDIGSATIKQGLSSLTQGNPQRMNDPGNY
RSPNLHRSLTDDRDSSDRYEPVQLRNDNHGSFGGSRASTGGSWGQDLRSANATIENGNSSSSNAGSKTREERLLETIVTSGGVRLQPTRDAIHVFLVEAA
KLDALALSRNFSVDVLVYNCFFFLSKVNISYGLPVHILYFGCFTYSQVRMKAVCVLESVLRKKDDEKFSIIASYFDDNIEAVERCSESPQSSLSEKARKV
LSLLDGGKAGGIASNSGKSVTAVSPVQIPDLIDTRESDDFLKADDPTEMLNDQGISNVPAASPFTHDLLGESLGSGENSTEQKNEDDPFADVSFHSGEST
AQASDLFSGMNFDQKQSSDENQVAANGPEIFDIFGSGSTLKSSQEKPAVNDLLAGMSISEGVKQQVSSPSIQFEGTTSDLSQQVSNDGLKNMVGGSQLGM
MNGSSMYPSSAMQYGMPPGMMLNPALAGQSIPLNYGAMGGFLTQQQLLAAMSNFQQLSNLNAQNYSQGNASQANGSSSALPDIFHPSFPNQSPTSMMSSS
KKEESKAFDFISVSSNLKTLNSFAPPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16270 ENTH/VHS family protein (.1) Lus10025811
[exp]
0 1
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10017555
[exp]
1.4 0.8120
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Lus10004626
[exp]
2.8 0.8046
AT2G34980 SETH1 phosphatidylinositolglycan syn... Lus10009915
[exp]
5.7 0.7945
AT3G02740 Eukaryotic aspartyl protease f... Lus10041103
[exp]
5.7 0.7999
AT2G26570 WEB1 WEAK CHLOROPLAST MOVEMENT UNDE... Lus10037354
[exp]
6.3 0.7815
AT5G49830 EXO84B exocyst complex component 84B ... Lus10035756
[exp]
10.5 0.7535
AT3G07990 SCPL27 serine carboxypeptidase-like 2... Lus10040387
[exp]
13.3 0.7375
AT2G41150 unknown protein Lus10018111
[exp]
17.1 0.7267
AT1G10430 PP2A-2 protein phosphatase 2A-2 (.1) Lus10033122
[exp]
18.4 0.7430
AT2G26570 WEB1 WEAK CHLOROPLAST MOVEMENT UNDE... Lus10035778
[exp]
19.5 0.7058

Lus10025811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.