Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025813 pacid=23177585 polypeptide=Lus10025813 locus=Lus10025813.g ID=Lus10025813.BGIv1.0 annot-version=v1.0 ATGGATTCTGAGGATGAAGGACGACAGATGGTGCAAGTTGATAAGGAGAGCTACGAAGGAAAGCTTGAACAAGAAGAAAAGGTTGAACAAGAAGAAAAGG TTGAACAAGAAGATAAGGAGAGCTACGAAGGCATTCCTCCGCCCCAATTTCCGACGGGAAGCGAAGCAGCGAGATATCTGGACGGAGATATGAATAGAGA CGGCGGAACTGAAAGTGACGGCGCCGGTGGTGCAGGAAGATGGCGGTATAGTGAAGGACAGACTTGGGAAGAAAGGCCATACGGTGGCAGAACTGAAAAA CTGAAATGA
AA sequence Show only first row Show all	>Lus10025813 pacid=23177585 polypeptide=Lus10025813 locus=Lus10025813.g ID=Lus10025813.BGIv1.0 annot-version=v1.0 MDSEDEGRQMVQVDKESYEGKLEQEEKVEQEEKVEQEDKESYEGIPPPQFPTGSEAARYLDGDMNRDGGTESDGAGGAGRWRYSEGQTWEERPYGGRTEK LK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025813 [exp]	0	1
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	6.7	0.7864
AT2G04480			unknown protein		Lus10001750 [exp]	8.7	0.7645
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	13.6	0.7500
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	14.1	0.7498
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	14.3	0.7597
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	17.1	0.6783
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	19.1	0.7651
					Lus10035514 [exp]	21.9	0.6669
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	23.5	0.7764
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	24.9	0.7631

Compare expression of checked genes

Lus10025813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.