Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02520 100 / 1e-21 unknown protein AT1G58210 75 / 1e-13 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004374 [exp] 77 / 2e-15 AT1G58210 112 / 6e-28 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G077400 [exp] 120 / 1e-28 AT5G02520 121 / 4e-29 unknown protein Potri.017G036100 [exp] 83 / 4e-17 AT1G58210 127 / 6e-33 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.007G124300 [exp] 80 / 7e-16 AT1G58210 113 / 5e-27 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09133 [flax] [poplar] SANTA SANTA (SANT Associated)
Representative CDS sequence Show only first row Show all	>Lus10025814 pacid=23177677 polypeptide=Lus10025814 locus=Lus10025814.g ID=Lus10025814.BGIv1.0 annot-version=v1.0 ATGGTCGATCCCCAAGTTTCCATGGATGCTTCTCCTCTCAACCGTCGCAACACCTCCACCAGTGGCTTATCGTCTCACTTCGAGAACACAGTGACGTTGG AAGAATGGTGGCTGATCAAATCCGACAACAATTGCAATGGAAAGAGTCTTGGAGTTGCAGGATACATTCCCAGCGACCAAAGAATTCCGAGGGTATTTCA CTCGGCACCGGTGATCAAAAGGCCCGATATCCTCACAATCGAGACATCTGATGCTGTTACTGTGCTCATCAATGGTGACATAAACAAGACTCGCACCCTT GAAAACGGATTCCCTCCTGAGATCTTTGATCATTTCGTCTTGGGATTTCCTTTTTACTGGAAACAATGTGAAAAGAGGTGGTGTGAAGTTGCAGCTAACA GTGAAGCTGATCGGGTGAAAACATATGCAGACACAATTCATAAGATTGGTATAGAATCTACTGCTGCAGTATCTAATCCACTTGCTGAAAAAGACTTGTC TGATGTTGGAAGTTCTGCCTGCGAAGAAGTGAACGTGGAAGACGATTCCTCACCTCAAGGTCCTTTAAAGCTTCCAGAAGAAGGAAATGAAGGCCACACA AGCTTAAATGCTGTTGAATTCTATGAGGGTGTCTCTCATGATGGCTCAAGGGATTTTCCATCTTCACCAAGTTTTCACACAACATCTGCTAGTTCCCTTC AGGATGTGGCAGCAGACGGAAGAGCAAATACAAGCTATATTGTTGATTCTCCTGTAAGAACCGGGAACTTAGAAACTAACACAGCAGGTGAGAAGAGGCC GACCTGGAATTCCAACAGTAAGGTTCCTTCTGTCAATGGGGTTGTAGCCCTCAACTATTGTTCCTCAGAAAAAATCATTGGTGATGGAAGAGACAATGTG GTTCAGCTGAATGTATCGACATCTAACCAAAAGACTCGGTCTCAAGTAAAGAAAAACAAGAAGTTAGCGGCAGAATTGACCAAGCCGCTTGATGAAGGGA AACTAGATGAAACTGTGCATCAAACTCTTCCCATCAGGAAGTCAAACAGCAACGTTCCTTCTGTCAATGAAGTTGCAGCCCTCAACCGTTGTTCCTTGGA AGAAGTCATTGGTAATGGAAAAGACAATGTGGTTCATTTATATTTATCGACATCTAACCAAAAGAGGTCTCAAGTTAAGCGAAACAAGAAGTCAGCGTCT AAATCGACCAAGCTGCTTGATGAAGGGAAACTAGATGGAACTGTGCATCAAACTCCTCCCAGGAAGTCAAACATCAAGATTTCTTCTGTCAATGGAGTTG CAGCCCTCAACCTTTGTTCCTCGGAAGAAGTTATTGGTAATGGGAGAGACCATGTGGGTCATCTGAATGTATCAAAGTCTAACCAAAGGACTGCATCTCG GTCTAAAGTGAAGAAAACCAAGAAGTTAGCGTCAGAATCCACCAAACCGCTTGATGAAGGGAAACTAGATGAAGCTGTGAATCAAACTCCTGTCATCTGG AAGTCAAACAGCAAGTTTCCTTCTGTCAATGGAGTTCCAGCCCTCAACCTTTGTTCCTTGGAAGAAGTCATTGATAATGGAAGAGACAATGTGGTTAATC TGAATGTATCAAAATCTAACCAAAAGAGTGCATCTCGGTCTAAAGTGAAGGGAAACAAGAAGTTAGCATCAAAATCCACAAAGCCTCTTGATGAAGGGAA ACTAGATGGAGCTGTGCATCAAACTCCCCCCTTATCGACAATTAATGAACGGGATATGGGTCACCTGAATGTGTCAAAATTTGACCAAAATACTGCAGCA GGATCTACAGTGACGCGAAACAAAAAGTTACGTTCGGAATCCACCATGGTGCATGACGAAGGGAAGAAAGATGGAGCTGGGCAGCAAACAAAAGTGAGTA GATCAAGAAGGACCAACAAAACATCAGAGACTGCAAACATAATCAACAATACAGATGGAGGTTCTGGTGTAAAGAAAGCTAAAAAAAGAATTCATTTTGA AACCCCAGTTAGTCCAAACACAGCAGAAGGAAAGACACGTTCTTGTCTCCGTTCTCCGGAATCCTTGAATCTTAAAAGATCGAGATCAGGGAGACTGCTC ATGCCTACCTTAGAATTCTGGCGCAACCAATCACCAGTTTATGATGGGGATCGAAAAGTTATTGGGATTCTTGAAGAGCTTGATTCAACAGGAAAGGCCA GATCTAGAGGCAGCAGATCCGAGCCTGTGAAGAAGAAACCGAAGGCACGATAG
AA sequence Show only first row Show all	>Lus10025814 pacid=23177677 polypeptide=Lus10025814 locus=Lus10025814.g ID=Lus10025814.BGIv1.0 annot-version=v1.0 MVDPQVSMDASPLNRRNTSTSGLSSHFENTVTLEEWWLIKSDNNCNGKSLGVAGYIPSDQRIPRVFHSAPVIKRPDILTIETSDAVTVLINGDINKTRTL ENGFPPEIFDHFVLGFPFYWKQCEKRWCEVAANSEADRVKTYADTIHKIGIESTAAVSNPLAEKDLSDVGSSACEEVNVEDDSSPQGPLKLPEEGNEGHT SLNAVEFYEGVSHDGSRDFPSSPSFHTTSASSLQDVAADGRANTSYIVDSPVRTGNLETNTAGEKRPTWNSNSKVPSVNGVVALNYCSSEKIIGDGRDNV VQLNVSTSNQKTRSQVKKNKKLAAELTKPLDEGKLDETVHQTLPIRKSNSNVPSVNEVAALNRCSLEEVIGNGKDNVVHLYLSTSNQKRSQVKRNKKSAS KSTKLLDEGKLDGTVHQTPPRKSNIKISSVNGVAALNLCSSEEVIGNGRDHVGHLNVSKSNQRTASRSKVKKTKKLASESTKPLDEGKLDEAVNQTPVIW KSNSKFPSVNGVPALNLCSLEEVIDNGRDNVVNLNVSKSNQKSASRSKVKGNKKLASKSTKPLDEGKLDGAVHQTPPLSTINERDMGHLNVSKFDQNTAA GSTVTRNKKLRSESTMVHDEGKKDGAGQQTKVSRSRRTNKTSETANIINNTDGGSGVKKAKKRIHFETPVSPNTAEGKTRSCLRSPESLNLKRSRSGRLL MPTLEFWRNQSPVYDGDRKVIGILEELDSTGKARSRGSRSEPVKKKPKAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02520			unknown protein		Lus10025814 [exp]	0	1
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	1.7	0.9146
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	4.2	0.9111
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	6.9	0.8701
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	8.5	0.8902
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	9.7	0.8707
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	11.2	0.8952
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	11.8	0.8822
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	12.8	0.8984
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	13.6	0.8939
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	16.2	0.8754

Compare expression of checked genes

Lus10025814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.