Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29130 579 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 578 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 397 / 1e-132 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 392 / 1e-130 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT1G47840 353 / 8e-116 HXK3 hexokinase 3 (.1) AT4G37840 302 / 9e-96 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038287 [exp] 741 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 696 / 0 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 677 / 0 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 538 / 0 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10005019 [exp] 431 / 1e-145 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10024336 [exp] 428 / 2e-144 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10019038 [exp] 420 / 1e-141 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10002041 [exp] 416 / 6e-140 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10011584 [exp] 263 / 3e-81 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190400 [exp] 632 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 598 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 437 / 4e-148 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 428 / 1e-144 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.005G238600 [exp] 412 / 1e-138 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 374 / 1e-123 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10025815 pacid=23177595 polypeptide=Lus10025815 locus=Lus10025815.g ID=Lus10025815.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGGTGGTGGTCACAGTGGTCTGTGTCGCGGCCGTCGCCGGCGTTGTTGGCGCCGGACTGGTTCTCCGCAAGAAGATGCAGAAAGACGGCA AATGGGGGCGGGCGATGGAGATTGTCAAGGAGCTTGAAGAAAAATGTAGCACCCCAACTGCCAAGCTCAAGCAGGTCGCAGATGCCATGGTCGTAGAGAT GCATGCCGGTCTTGCCTCTGAAGGCGGAAGCAAGCTCAAGATGCTTATCAGCTACGTCGACAATTTGCCCACCGGTGATGAGTCAGGGCTGTATTATGCT TTGGATCTTGGAGGAACAAATTTCCGTGTGCTGAGGGTGCATTTAGGTGGCCGAAATGGTGGACTTGTTAATCAGGAGTTTGCTGAGGTTCCGATCCCTC CTGAATTGATGACTGGAGCTTCTGATGCACTTTTCGATTATATTGCAGCCGAGCTTACAAAATTCGTTGCTGAAGAAGGCGAAGAGCATGAGCTTCCACC GGGGAGAAAGCGAGAGTTAGGTTTTACGTTTTCGTTCCCCGTTAATCAAACATCCATTGCTTCTGGGACTCTTGTTCGGTGGACAAAAGGGTTCTCGATC GATGAACTGGTTGGCCAAGATGTTGTTACAGAATTGACCAAAGCCATGAAGAGGCAAAATCTTGAAATGCATGTGTCAGCTCTGGTGAATGATACAGTGG GAACACTAGCTGGAGGGAGATACACCAACAAAGATGTTGATGCTGCTGTTATCTTGGGTACAGGAACAAATGCTGCTTATGTTGAGCGAGCTCAAGCAAT ACCAAAATGGCATGGTGCACTACCTAAATCAGGAGAAATGGTTATCAATATGGAGTGGGGCAATTTTAAGTCGTCACATCTTCCTATTACTGAGTATGAT AATGCACTCGATGTTGAGAGCTTAAACCCTGGTGAACAGATTTTTGAGAAGATTATTTCTGGCATGTATTTGGGAGAAATAGTACGCAGAGTTCTCCTAA AGATGGCCGAAGAAGCTTCCTTTTTTGGTGATACGGTGCCTTCGAAACTCAAAATCCCTTTTGTGCTGAGGACGCCTGATATGTCAGCAATGCACCACGA CACATCCGCAGATCTCAAAGTTGTAGCAACTAAATTGAAGGACATTCTGGAGGTTATCAATATGGAGTGGGGCAATTTTAAGTCGTCACATCTTCCTATT ACTGAGTATGATAATGCACTCGATGTTCAGAGCTTAAACCCTGGTGAACAGATTTTTGAGAAGATTATTTCTGGCATGTATTTGGGAGAAATAGTACGCA GAGTTCTCCTAAAGATGGCCGAAGAAGCTTCCTTTTTTGGTGATACAGTGCCTTCAAAACTCAAAATCCCTTTTGTGCTGAGGACGCCTGATATGTCAGC AATGCACCACGACACATCCGCAGATCTCAAAGTTGTAGCAACTAAATTGAAGGACATTCTGGAGATACCGAATACATCGTTGAAAGCGAGAAAGGTGATC GTTGAGGTATGCAACATAATTGCGACGCGTGGAGCTCGTCTTGCTGCTGCTGGAGTGGTAGCCATCTTGAGAAAGATGGGGAAAGACACAATGAAGGAAG GAGGAGAAGTAGGGAAAACGGTGGTGGCGATGGATGGTGGTTTGTATGAGCACTACAATGAGTATAGCAAGTGCTTAGAGATCACCCTTCCAGAATTGGT AGGCGAGCAAGTATCTAAAACCGTACAGATCGTGCATGCCAACGATGGATCGGGGATTGGAGCCGCCCTGCTTGCTGCCTCACATTCACAGTATCTTTGA
AA sequence Show only first row Show all	>Lus10025815 pacid=23177595 polypeptide=Lus10025815 locus=Lus10025815.g ID=Lus10025815.BGIv1.0 annot-version=v1.0 MEKKVVVTVVCVAAVAGVVGAGLVLRKKMQKDGKWGRAMEIVKELEEKCSTPTAKLKQVADAMVVEMHAGLASEGGSKLKMLISYVDNLPTGDESGLYYA LDLGGTNFRVLRVHLGGRNGGLVNQEFAEVPIPPELMTGASDALFDYIAAELTKFVAEEGEEHELPPGRKRELGFTFSFPVNQTSIASGTLVRWTKGFSI DELVGQDVVTELTKAMKRQNLEMHVSALVNDTVGTLAGGRYTNKDVDAAVILGTGTNAAYVERAQAIPKWHGALPKSGEMVINMEWGNFKSSHLPITEYD NALDVESLNPGEQIFEKIISGMYLGEIVRRVLLKMAEEASFFGDTVPSKLKIPFVLRTPDMSAMHHDTSADLKVVATKLKDILEVINMEWGNFKSSHLPI TEYDNALDVQSLNPGEQIFEKIISGMYLGEIVRRVLLKMAEEASFFGDTVPSKLKIPFVLRTPDMSAMHHDTSADLKVVATKLKDILEIPNTSLKARKVI VEVCNIIATRGARLAAAGVVAILRKMGKDTMKEGGEVGKTVVAMDGGLYEHYNEYSKCLEITLPELVGEQVSKTVQIVHANDGSGIGAALLAASHSQYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10025815 [exp]	0	1
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	3.3	0.8953
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	8.4	0.8669
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	8.5	0.8464
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	12.4	0.8319
AT4G24830			arginosuccinate synthase famil...		Lus10013207 [exp]	16.4	0.8227
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	19.3	0.8151
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	19.8	0.8328
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	20.9	0.8017
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	22.7	0.8294
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10003374 [exp]	23.2	0.8456

Compare expression of checked genes

Lus10025815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.