Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16500 221 / 1e-70 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 208 / 8e-66 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT2G33310 129 / 2e-35 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT5G25890 127 / 2e-35 AUX_IAA IAR2, IAA28 IAA-ALANINE RESISTANT 2, indole-3-acetic acid inducible 28 (.1) AT4G28640 125 / 4e-34 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT1G04550 121 / 1e-32 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT4G29080 122 / 2e-32 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT3G04730 120 / 2e-32 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT2G22670 110 / 1e-27 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT3G23050 108 / 2e-27 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038284 [exp] 504 / 2e-180 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038285 [exp] 457 / 3e-163 AT3G16500 224 / 3e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10037587 [exp] 248 / 7e-81 AT3G16500 251 / 4e-83 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10006842 [exp] 227 / 2e-72 AT3G16500 226 / 3e-73 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10023719 [exp] 139 / 3e-38 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10014464 [exp] 135 / 1e-36 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10034962 [exp] 123 / 2e-32 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10015907 [exp] 120 / 8e-32 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10019241 [exp] 120 / 3e-31 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190300 [exp] 315 / 7e-107 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.003G048100 [exp] 298 / 7e-100 AT3G16500 224 / 4e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.018G057000 [exp] 198 / 6e-61 AT3G16500 192 / 3e-59 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.006G236200 [exp] 186 / 3e-56 AT3G16500 184 / 3e-56 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.010G065200 [exp] 130 / 3e-35 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 127 / 3e-34 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.013G041400 [exp] 125 / 4e-34 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G172400 [exp] 126 / 8e-34 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.005G218300 [exp] 124 / 1e-33 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 122 / 1e-32 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10025817 pacid=23177482 polypeptide=Lus10025817 locus=Lus10025817.g ID=Lus10025817.BGIv1.0 annot-version=v1.0 ATGTCTCCAGTGGAGAAGAAGCTCCAGCTAAGGCTTGGTCTGCCTGGCGATGATGATGATAATGAATGGTCCCTTGGAAACAAAACAAGCAGTGCCAGAA ATAGGGAAAGAAGAAGAGATGAGTTGTCCCTGCTCTCTCTGGGATATGTCAACAATCATCATTACCACCATCTCCATCATCAACAAGCGACCAAATTTTC TTCTCATGAGAAACAACAAATAGGTTCTCCAGCAGCAGCATCATCATCCTCTGTGTGGTTTAATCAACAGCAGGCTCCACCATCTTCCTTTCTTCAGTTT CCAACAACAAAAACAGCAGCAGCAGACAAGCAGCAGAGCTTGTTGGGTACTGTGGCAAAGGAATCCTCACAGCCCTGTTGCACTAAAGTAGGGGCAGTAG ACTTGCAGCAGAGTGTTGCAGAAAAGAGGGCGTTTTCACCTCCTCCTCCTGCAAATACAGCTGTCCCCAACACCTCTCAGAAAAGAACTGCTCCTGGGCC AGTGGTGGGTTGGCCTCCAATTCGTTCCTTTAGGAAGAATCTGGCGAGCGGGAGCAGCTCTTCAAAGCAGCAGCAGCCAGCAGTTGATGAGTCAAAAAAT GGAAACCTGAACAAGAAGGCTGGCAGTGATAAAAAACCGGTTCAAGTATGCAAGAAAGGATTGTTCGTTAAGATCAATATGGATGGTGTCCCAATAGGCA GGAAAGTTGACCTTACAGCCTATAACAGCTACCAAAGGCTCTCCGTTGCTGTTGGTGATCTTTTCAGAGGGCTTCTTGCAGCTCAAAGAGATCCCAATTG CGATGAAATGGTGAAGAAGCAAGAAGAGGAAGAGAGAGCAATTACAGGGTTATTTGACGGGAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGG GACAGGATGCTTGTCGGAGATGTCCCATGGCAGATGTTTGTATCTACGGTGAAGAGGCTTCGTGTTCTGAAGAGTTCTGAGGTTTCTGGTCTAACCCGTG AGTGA
AA sequence Show only first row Show all	>Lus10025817 pacid=23177482 polypeptide=Lus10025817 locus=Lus10025817.g ID=Lus10025817.BGIv1.0 annot-version=v1.0 MSPVEKKLQLRLGLPGDDDDNEWSLGNKTSSARNRERRRDELSLLSLGYVNNHHYHHLHHQQATKFSSHEKQQIGSPAAASSSSVWFNQQQAPPSSFLQF PTTKTAAADKQQSLLGTVAKESSQPCCTKVGAVDLQQSVAEKRAFSPPPPANTAVPNTSQKRTAPGPVVGWPPIRSFRKNLASGSSSSKQQQPAVDESKN GNLNKKAGSDKKPVQVCKKGLFVKINMDGVPIGRKVDLTAYNSYQRLSVAVGDLFRGLLAAQRDPNCDEMVKKQEEEERAITGLFDGSGEYTLVYEDNEG DRMLVGDVPWQMFVSTVKRLRVLKSSEVSGLTRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10025817 [exp]	0	1
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10019521 [exp]	8.8	0.7253
					Lus10011106 [exp]	12.7	0.7662
					Lus10030114 [exp]	21.1	0.7530
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	21.4	0.7650
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	25.5	0.6781
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10018405 [exp]	30.2	0.7461
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	32.1	0.7511
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10024191 [exp]	39.8	0.7253
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	42.4	0.7011
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	48.7	0.7084

Compare expression of checked genes

Lus10025817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.