Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 497 / 4e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038283 [exp] 634 / 0 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 444 / 4e-157 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 424 / 5e-149 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 419 / 2e-147 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 414 / 2e-145 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 384 / 1e-133 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 358 / 3e-124 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 228 / 2e-72 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 226 / 1e-71 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 518 / 0 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 248 / 2e-80 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 243 / 2e-78 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10025818 pacid=23177548 polypeptide=Lus10025818 locus=Lus10025818.g ID=Lus10025818.BGIv1.0 annot-version=v1.0 ATGTCGTCTTCTTCAGAAGATATAATAAATAATGAGTGGCTGAGAGAACCGGAAGAATCGGCCATCGGAGAAATGACAACGGCGGCGACCCTATTCAGCG AGGTGACACTCTCGCAGCAGAAACAATTCGATTCAATCTCTTTCCCAGCCATACTCACTCCAAATTGTGATCCTACTCCTACGTTAGATATCCTCACTTC CGCCGTAAAATCCGAGAAGCCTTTCCTCGAATCTCTCCTCCTCAAGTCAGGGGCGATTCTTTTCAGGGGATTCCCTCTCACCTCCGCTTCCCACTTCAAC GAATTCGTCGAATCCTTCGGCTACCAGGAGCTCCCCTACGTCGGCGGAGCTGCTCCTCGTACAAACGTCGTCGGCCGTGTGTTCACCGCCAATGAATCCC CTCCCGACCAGAAAATCCCTTTCCACCACGAGATGGCCCAGGTTCCGGAGTTCCCATCAAAACTGTTCTTCTTCTGCGAAGTGGAGCCTGGAAGCGGCGG CGAGACCCCAATTGTTCTTAGCCACGTCGTGTACCAAAAGATGAAAGACAAGTACCCGGAATTCGTCCGCCGGTTGGAGGAGCACGGGTTGATTTACAAC AGAGTTTTGGGCGAGGAAGACAACCCTATGTCCCCAATTGGCCGTGGCTGGAAATCCACTTTCTTAACCAATGACAAAGCTGTAGCCCAGGAAAGGGCTG CAAGGCTAGGAATGAAACTGGAATGGTTGGAGGATGACGGGGTGAAGACGGTAATGGGACCGATTCCGGGAGTGAAGACGGACAAGACTAGGAGTAATCG GAAGATATGGTTTAACAGTATGGTGGCTGCATACACTGGGTGGGAAGACGAGAGGAATGACCCAAAGAAGGCTGTTACTTTTGGAGATGGGACGCCATTG CCTGGTGACATCGTCTACGATTGTTTGAATATCCTAGAAGAGTCGAGTGTTGTCATCCCTTGGAAGAAAGGTGATGCTCTTCTTATAGATAACTGGGCTG TTCTTCATGCCCGGAAATCCTTCGACCCGCCTCGAAGGGTTCTAGCTTCCCTCGTCAAGTGA
AA sequence Show only first row Show all	>Lus10025818 pacid=23177548 polypeptide=Lus10025818 locus=Lus10025818.g ID=Lus10025818.BGIv1.0 annot-version=v1.0 MSSSSEDIINNEWLREPEESAIGEMTTAATLFSEVTLSQQKQFDSISFPAILTPNCDPTPTLDILTSAVKSEKPFLESLLLKSGAILFRGFPLTSASHFN EFVESFGYQELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHVVYQKMKDKYPEFVRRLEEHGLIYN RVLGEEDNPMSPIGRGWKSTFLTNDKAVAQERAARLGMKLEWLEDDGVKTVMGPIPGVKTDKTRSNRKIWFNSMVAAYTGWEDERNDPKKAVTFGDGTPL PGDIVYDCLNILEESSVVIPWKKGDALLIDNWAVLHARKSFDPPRRVLASLVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	0	1
AT5G67020			unknown protein		Lus10019344 [exp]	1.0	0.9599
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	2.0	0.9510
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	2.8	0.9405
AT4G22560			unknown protein		Lus10028927 [exp]	3.0	0.9493
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	5.0	0.9363
AT4G32020			unknown protein		Lus10005344 [exp]	5.3	0.9268
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	6.0	0.9304
AT5G62140			unknown protein		Lus10015008 [exp]	6.3	0.9221
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Lus10030192 [exp]	7.2	0.9110
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	7.5	0.9110

Compare expression of checked genes

Lus10025818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.