Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038282 [exp] 482 / 1e-173 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 444 / 6e-157 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 439 / 1e-155 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 365 / 3e-126 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 358 / 1e-123 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 356 / 8e-123 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 334 / 3e-114 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 223 / 1e-70 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 221 / 3e-70 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 432 / 6e-153 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 254 / 4e-83 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 251 / 1e-81 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10025819 pacid=23177645 polypeptide=Lus10025819 locus=Lus10025819.g ID=Lus10025819.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCAACGGTGGACGAAACATTAATAGCCTTCAGGGAAATCAAAGTCTCACAGCAGAAGCAATTCGATTCGATCACTTTCCCTTCCGTCGTCT CCCCAACTTTCTTACCTTCTTCCATCACTCAAGTGGCCGCTGCAATCCGATCCCAGAAGCCCTTCATCGAATCACTGCTCCAGAAATCAGGAGCCGTCCT CATCAGAGGACTCCCCTTGGACTCGGCGTCCGACTTCAACCATGTCGTCGAAGCTTTCGACTTCGAGGAGCTCCCTTACATCCGCGGGGCGGCTCCGAGA AACATCGTTGTCGGCCGCGTGTACACGGCTAACGACGCTCCGTCCGAGCACAAGATCACCTTCCACCATGAGATGTCCCAACTGCCTGTCTACCCGACAA AGCTCTTCTTTTTTTGCGAGGTGGAGCCTGGAAGCCGGGGAGAGACCCCTTTGGTTCTGAGCCATGTAGTGTACGAGAGGATGAAGGACAAGTACCCCGA ATTCGTGGAGAAGCTGGAGGAGCATGGTCTCATCTACACGAGGATAGTAGGGGACGAAGATGATCCTTCGTCGACAATCGGTCGAGGGTGGAAATCAACC TTTTTAACGGACGACAAGATCGTGGCGGAGGAAAGAGCAGAGAAGCTGGGGACGAGGTTGGAGTGGACGGAGGATGGAGGAGCGAAGACGGTGATGGGAC CCATGGCTGGAGTGAAGGTAATTGACGACCAAGGGGAGATGAAGAAGAAGAAGACTTGGTTTAATATGTTGGTGGATGCTTACTTGTATTGGGATGACGC GAGGAATGATCGGAGGCAGGCGGTTACTTTCGGGGATGGAGGGTTTTTGCCGGAGGAGGTGGTGAGAGATTGCGAGAGGATATTGGAAGAGGAGAGCGTT GCTATACCATGGAAGAAAGGTGATGTTTTGTTGTTGGATAATAGGGCTGTGCTTCATGCTCGTAATCCCTTTGATCCCCCCAGAAAGATTCTTGCTTCCC TCTGCAAGTAG
AA sequence Show only first row Show all	>Lus10025819 pacid=23177645 polypeptide=Lus10025819 locus=Lus10025819.g ID=Lus10025819.BGIv1.0 annot-version=v1.0 MAAATVDETLIAFREIKVSQQKQFDSITFPSVVSPTFLPSSITQVAAAIRSQKPFIESLLQKSGAVLIRGLPLDSASDFNHVVEAFDFEELPYIRGAAPR NIVVGRVYTANDAPSEHKITFHHEMSQLPVYPTKLFFFCEVEPGSRGETPLVLSHVVYERMKDKYPEFVEKLEEHGLIYTRIVGDEDDPSSTIGRGWKST FLTDDKIVAEERAEKLGTRLEWTEDGGAKTVMGPMAGVKVIDDQGEMKKKKTWFNMLVDAYLYWDDARNDRRQAVTFGDGGFLPEEVVRDCERILEEESV AIPWKKGDVLLLDNRAVLHARNPFDPPRKILASLCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	0	1
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	1.0	0.9537
AT4G32020			unknown protein		Lus10005344 [exp]	1.4	0.9461
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	2.8	0.9193
AT4G22560			unknown protein		Lus10028927 [exp]	3.9	0.9400
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	3.9	0.9193
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	6.2	0.8961
					Lus10003135 [exp]	7.5	0.8934
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	7.7	0.9182
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	10.0	0.8960
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10041372 [exp]	10.4	0.8868

Compare expression of checked genes

Lus10025819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.