Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12540 219 / 2e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038281 [exp] 910 / 0 AT4G12540 225 / 1e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053300 [exp] 393 / 2e-132 AT4G12540 246 / 5e-76 unknown protein Potri.013G040800 [exp] 381 / 3e-127 AT4G12540 231 / 4e-70 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025820 pacid=23177588 polypeptide=Lus10025820 locus=Lus10025820.g ID=Lus10025820.BGIv1.0 annot-version=v1.0 ATGTCGAGAAACGAAGCTACTAGTGCCAAACCGAGTTCCACGAGAAGGCCATTACGAGAGCTATCGAATATCCACAGCAGCTTCGGCGCCGGAGGCGGTG ACAGTGTCACCTGTGTCGGAAACAGAGGAGTTCCGGTCTGCAAGTCGATGGTGGTAAAAAAGATCGCACCGCGAAGTTCAACTTGTATTGAAGAAATGAA AGAAGACGATGACGATTGTCTTGATCGTCTGTTGGCCGTCCACTCCGATCTCTCCTCCCTCACTCGCCAGATTGACGATCTTGTTGCGCGAACATTCAAG CTGAAATCTGCTGGTAAAGATGGACGGCGAGAAATTGAATCGTTTTCTCATTTTTTATCCGATACGCTTTCTTCTTTCAAGCCTTGGGTGTCAAGATTTG AGAAGGCACTCGCCACTCCTAGCTTGGAGATGGAGAATCAGGTACAAGAAACTCCGGCACAGAAACCCGCTTCTGCTGTAAACGAAGGAGGTTTGGAAAA TGGAAGTCCAGAGGAAAGCGAGATGGACACTTTGATCTCTCCTTCCCCTCTTGTTTCCTGGCGAAAAGATTGCAACATTGACAGGAGCCGGCAGTTGTTT CTCCTTACACCTCTCCCAATGTCAAAAACATTATCAATCAAACGACGGGAGTTGTCTGCAAGAGTAATGAAAAACATGGTTCCTGGATCCAGAACGGAGT CGTCATCATTTTTGGCAATCTCTAGAGACGACAATGATGATTTGCTTGAAGGCATGAAGATGAACACAACTCCAAGTAAGCCTTGTGGGGATTCTGTTGC CACAGAAGTGAAAAATAACAATGAGTGTGGGTTAGACTTTTCCACACCCATGACTACTCCAAAGAGAGACCACCCTTCCATGATGGTTATGACTCCGTGC TTAAAGATGTCCCCTCCAAAATCTTGCTTTTTGCTTGAGCCAATAGCTGAGATGCCTCACAATATCAATTGCTGCAATCGACAATCGACTCCGTACCCAG TTGGCATACATTCACAGATGTCGGAGCCTGAATCTTCTGGAAGTGAAGGTTACGAGGATCTGGGGGTTAGGTACCCTGAACTACTGGGTATTCAGTGGGC TTGCAAATCTGGAATGGGAAACAAAGATTTGGAGAAGTCACCAGACTGGAACTTTTCTCCTCCAAAAACTTGTGTTCTGTTGCAACCTTCTGATGAGAAT TCAATGGTTGATGTCCATGCCATTGACGTCAACTTCCCACCAAACCAAGTGCAAAAAGATGATGCTCAAGTCCAAAGACCTCTCCATCAAGAGCCTGCAG GCAGTAACTTTGAGAAAGTGGTAAGCACTCCCGCATGGAAAGATGTTGAAAGCACAGTAAGAAGAGGAGGTAAGAATCCCGGAGAGAACACTCTGAAAAG GGAGCTGTGGACTAAGTTCGAAGCACTCACCACTTGTGGAGTTGGATTGAATGCCTCTGCAATAGTAGGTAGCTCAGGGAAAGGATTTATGGATATGCTT GATGAAGTTTCCCGTGAAGAGCAAACCAGAGTGGATACAAGTTGA
AA sequence Show only first row Show all	>Lus10025820 pacid=23177588 polypeptide=Lus10025820 locus=Lus10025820.g ID=Lus10025820.BGIv1.0 annot-version=v1.0 MSRNEATSAKPSSTRRPLRELSNIHSSFGAGGGDSVTCVGNRGVPVCKSMVVKKIAPRSSTCIEEMKEDDDDCLDRLLAVHSDLSSLTRQIDDLVARTFK LKSAGKDGRREIESFSHFLSDTLSSFKPWVSRFEKALATPSLEMENQVQETPAQKPASAVNEGGLENGSPEESEMDTLISPSPLVSWRKDCNIDRSRQLF LLTPLPMSKTLSIKRRELSARVMKNMVPGSRTESSSFLAISRDDNDDLLEGMKMNTTPSKPCGDSVATEVKNNNECGLDFSTPMTTPKRDHPSMMVMTPC LKMSPPKSCFLLEPIAEMPHNINCCNRQSTPYPVGIHSQMSEPESSGSEGYEDLGVRYPELLGIQWACKSGMGNKDLEKSPDWNFSPPKTCVLLQPSDEN SMVDVHAIDVNFPPNQVQKDDAQVQRPLHQEPAGSNFEKVVSTPAWKDVESTVRRGGKNPGENTLKRELWTKFEALTTCGVGLNASAIVGSSGKGFMDML DEVSREEQTRVDTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12540			unknown protein		Lus10025820 [exp]	0	1
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10019535 [exp]	3.7	0.9163
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	4.2	0.9233
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	5.8	0.9094
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	5.9	0.9268
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	6.3	0.9235
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	6.9	0.9195
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	9.5	0.9146
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	10.8	0.8975
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	11.5	0.9043
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	11.8	0.9138

Compare expression of checked genes

Lus10025820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.