Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16360 201 / 3e-67 AHP4 HPT phosphotransmitter 4 (.1.2) AT3G21510 112 / 3e-32 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT1G03430 99 / 8e-27 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G29350 98 / 1e-26 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT5G39340 96 / 6e-26 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G80100 69 / 2e-15 AHP6 histidine phosphotransfer protein 6 (.1.2) AT5G19710 59 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038280 [exp] 263 / 5e-92 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10012777 [exp] 105 / 2e-29 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 104 / 5e-29 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 100 / 2e-27 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 96 / 6e-26 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10003256 [exp] 83 / 7e-21 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10023127 [exp] 82 / 3e-20 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10035596 [exp] 81 / 4e-20 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10011487 [exp] 82 / 6e-20 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189900 [exp] 223 / 5e-76 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.018G046800 [exp] 173 / 2e-56 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 169 / 1e-54 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2) Potri.008G197600 [exp] 114 / 4e-33 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 112 / 3e-32 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 111 / 7e-32 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 110 / 2e-31 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 108 / 7e-31 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 107 / 2e-30 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.014G136200 [exp] 99 / 5e-27 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10025821 pacid=23177454 polypeptide=Lus10025821 locus=Lus10025821.g ID=Lus10025821.BGIv1.0 annot-version=v1.0 ATGGACAGAAGCCAGTCACACAGGCAAGTCGCCATGATGAAGCAGTCTCTATTTGAGCAGGGATATCTTGATGAAGAACAGTTGGCCCAGCTGGAAGAAC TGAAGGACGATGCTAACCCAAATTTCGTGGAGGAAGTTGTGACATTGTATTACAGAGATTCGGCCAGACTTGTGTTCGGCATTGAGCAACTTCTGGAGAA AAGACCCCTTGATTTCAACAAGCTGGATACCTGCATGCATCAGTTCAAAGGAAGCAGCTCCAGCATTGGAGCCAACAGGGTGAAAGCAGAGTGCGCTGTG TTTAGGGAATATTGCAGAGCAGGAAATGGAGAAGGATGCATAAGGACATTCCAGCAGGTGAAGAAAGAATATACAACACTCAGGAAGAAACTCGAGACTT ATTTTCAGCTGGCAAGGCAAGCCGGACCTACTCAGACAGCATGCCGCCCAAAGTGA
AA sequence Show only first row Show all	>Lus10025821 pacid=23177454 polypeptide=Lus10025821 locus=Lus10025821.g ID=Lus10025821.BGIv1.0 annot-version=v1.0 MDRSQSHRQVAMMKQSLFEQGYLDEEQLAQLEELKDDANPNFVEEVVTLYYRDSARLVFGIEQLLEKRPLDFNKLDTCMHQFKGSSSSIGANRVKAECAV FREYCRAGNGEGCIRTFQQVKKEYTTLRKKLETYFQLARQAGPTQTACRPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	0	1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	1.0	0.9735
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	2.4	0.9493
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	3.3	0.9225
					Lus10008409 [exp]	3.5	0.9520
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	4.2	0.9238
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	6.3	0.9396
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	8.5	0.9298
					Lus10016111 [exp]	8.7	0.9107
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	9.2	0.9303
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	10.7	0.9016

Compare expression of checked genes

Lus10025821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.