Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59870 2107 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 2106 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 2050 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT2G36380 1611 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 1608 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 1608 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G26910 1535 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 1504 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1478 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1456 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014150 [exp] 2574 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10037562 [exp] 2534 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10008090 [exp] 1618 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1588 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1585 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1573 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1550 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10034020 [exp] 1529 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 1529 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189500 [exp] 2305 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.003G049600 [exp] 2231 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.001G048900 [exp] 1669 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1667 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1655 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1650 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1649 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.008G024400 [exp] 1647 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.006G115000 [exp] 1646 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.006G248500 [exp] 1645 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10025824 pacid=23177598 polypeptide=Lus10025824 locus=Lus10025824.g ID=Lus10025824.BGIv1.0 annot-version=v1.0 ATGGAGGGGACGGAGCGGGTGAGGGAATCTGCTCGTAGGCCGGGCCACAGCAGAAGCTTGACTCGGAGCATAAGCAGGAGTTTAAGCAGGGCAAGTTGGG GGATGGAAGAGGTATTCGCCGCCGGCTCTGGCAGGCAGTACTCACGGCGGAGCAGCATGCACGGCGATCAAGACGAGGAAGCCTTGAAATGGGCTGCCAT CGAGCGTCTCCCTACTTACGACCGCCTCAGGACCACCATCATGAAATCCGTCATGGATGACAACAACAACAACAATAACCGTAACCTTCCCAGCCACAAA CAAGTCGACGTGGCCAGGCTTGACGACGCCGACCGCCAGCAGTTCATCGACCACATTTTCAAAGTCGCCGAGGAAGACAACGAGAAGTTCCTCAAGAAGT TCCGACAGAGAATTGACAAAGTTGGGATACGTCTGCCGACGGTGGAAGTGAGGTTCGAGCATTTAACGATAGAGGCGAACTGCTTCATCGGCGACAGAGC TCTACCAACGCTCCCAAACGTAGCTAGGAACATAGTGGAATCGGGGCTTAACAAGATCGGCATCCATTTGGCTAAACAAACTAAGCTCACCATCCTCAAA GACGTGTCCGGAATAATCAAACCTTCCAGGATGGCATTGCTGTTAGGTCCACCTTCTTCTGGGAAAACGACCCTTCTTCTCGCTTTGGCTGGGAAACTGG ATCCGAATTTAAAGGTAAGAGGAGACATAACATACAACGGACATGGAATGAACGAATTTGTTCCTAGGAAGACATCCGCCTACATTAGTCAGAACGATGT TCATGTCGGTGAGATGACGGTGAAAGAAACATTGGATTTTTCGGCTAGGTGCTTGGGCGTCGGAACTCGATACGATCTTCTAAGTGAATTGGCGAGAAGA GAGAAGGAAGCAGGGATATTCCCGGAAGCAGATGTTGACCTTTTCATGAAGGCAACGGCAATGAAAGGAGTGGAAAGCAGCCTCATTACAGACTATACTC TCAAAATTCTGGGGCTTGATATATGCAAGGACACAATTGTGGGAGATGATATGATTAGAGGAATATCTGGTGGACAGAAGAAAAGAGTTACAACAGGAGA AATGATCGTGGGACCCACAAAAACTCTGTTCATGGACGAAATATCAACGGGTCTAGACAGCTCGACGACATATCAAATTGTGAAGTGTCTGCAGCAGATT GCTCACCTCACCGATGCCACCATTTTCTTGTCCCTACTCCAACCCGCCCCCGAGACATTCGATCTATTTGATGACATCATCCTCTTATCCGAGGGTCAAA TAGTCTACCAAGGCCCGCGACAGCACATCCTTGAATTCTTCTCCAGCTGTGGGTTTCACTGTCCAGAGCGCAAGGGAACCGCCGATTTCTTACAAGAGGT GACTTCACAGAAAGACCAAGAGCAGTATTGGAGACACAGGAGCAAGCGATATGAGTATGTATCCGTGTCAGAGTTTGTGCAGAGGTTCAAGAGGTTTCAC GTCGGTATGCGTCAAGACAACGAGCTCTCGGTGCCATATGATCGGTCACAAGGGCACAAGGCGGCGTTGGTGTACGATAAGTACACTGTCCCAAAGTTGG AACTGCTCAAGGCGAGTTGGGACAAGGAGTGGCTGCTGATGCAGCGAAACTCAGTAGTGTATGTGTCGAAGACGATACAGATGATTGTCGTGGCGGTTAT AGCGTCAACGGTGTTCTTGAGGACGAGAATGAAGCAGAGGAGTATCGATGATGGAGGTGCATACATTGGTGCCCTTATATTTGCTATGATCCATAACATG TTCAATGGGTTTGCTGAGTTGTCCCTCATGATCAAGAGGCTTCCTGTGTTCTACAAGCAAAGGGATCTCTTGTTTCACCCTCCTTGGACCTTTACATTGC CAACATTCTTGCTTGGGGTGCCTTCGTCGATACTCGAGTCAACGGTTTGGATGGTTGTGACTTATTACACCATCGGATATGCACCCGAGGCTAGCAGGCG AGTCAACTATTTGTTGTTTTTCAAGCAGTTTTTGGTGGTGTTTTTGATCCAGCAAATGGCAGCGGGTACCTTTAGACTCATTGCAGGAGTTTGCAAGACA TTTATAATTGCCAACACTGGAGGAGCTCTTACTATTTTGCTCATTTTCTTGCTTGGAGGCTTCCTCCTGCCGAAAGGACAAATTCCTGTATGGTGGGAGT GGGCTTACTGGGTTTCTCCATTATCTTATGGATACAATGCATTAGCTGTTAATGAAATGACTGCTCCAAGGTGGATGAACCAACTGGGACCAAACAATAT CACAAGCTTAGGCGTACAAGTGCTTATGGCTTTTGATGTTCCCACAAACAAGAACTGGTATTGGATAGGGACGGGGGCTCTTTTGGGATTTGCAATCCTT TTCAATGTCCTCTTCACATTTTCCTTGATGTACTTAAGTCCTCCTGGAAAGCAACAAGCTGTAATCTCAGAGGAAACTGCAAGGGACATGGAGGGTGACT CCAAACACACTCCAAGGCTTGTGAGATTAGAGTCCAGCAAAGATACATTGCCTCGAGCACTATCCACTAGAGATGGAAACAACACGAGAGAAGTAGCAAT GATGAGAATGAGCAGCCGCACCAACCCAAATATTTCAAACACAAATGGGGATTCAGCAGCTCTTGATGCAGCCGGTGGTGTTGCTCCCAAAAGAGGGATG GTTCTTCCTTTCACTCCTCTAGCCATGTCTTTTGACAGTGTCAACTACTATGTTGACATGCCACCCGAAATGAAGGAGCAGGGAGTGGCGGAGGATAGGC TTCAGTTGCTCAGAGAAGTGACAAGTTCGTTCCGGCCTGGAGTCCTAACTGCACTTATGGGAGTTAGTGGAGCTGGAAAGACAACGCTGATGGATGTTTT AGCTGGTAGAAAAACTGGTGGCTACATTGAAGGTGATATCAAAATTTCTGGGTTTCCAAAGAAGCAAGAAACTTTTGCAAGAATTTCAGGTTACTGTGAA CAGACAGATATCCATTCTCCTCAAGTCACCGTTAGAGAATCTTTGATCTTCTCAGCTTTTCTTAGACTACCTAAAGAAGTCAGCAAAGAGGAAAAGATGA AATTTGTTGATGAGGTGATGGAATTGGTAGAGCTGGAGAATCTCAAAGATGGCATAGTTGGTCTTCCAGGAGTTACGGGTTTATCAACAGAGCAAAGAAA GAGGTTGACTATTGCAGTGGAGCTAGTAGCTAATCCGTCAATCATTTTCATGGATGAACCAACATCAGGTCTGGATGCAAGAGCAGCAGCTATTGTCATG AGAACTGTTAGAAATACTGTGGATACGGGAAGAACAGTGGTTTGCACCATTCATCAGCCTAGCATTGATATATTTGAAGCTTTTGACGAGTTGTTGTTGA TGAAGAGAGGAGGACAAGTGATCTATTCGGGACCATTAGGCCGCAACTCCCTAAAGATCGTTGAGTACTTTGAGTCAATTCCTGGAGTCCCTAAAATCAA AGAGAAATATAATCCAGCAACATGGATGCTTGAAGTAAGCTCAATAGCAGCTGAGGTTCGCCTTGGAATAGATTTCGCTGAGCACTACAAACGATCATCA TTGTGCCAGAGAAATAAGGCATTAGTGAAGGAGTTGAGCACACCACCACCTGGATCAAAAGATCTGTACTTCGCAACTCAATTCTCTCAACCCATTTGGG GACAATTCAAGTCTTGTTTGTGGAAACAATGGTGGACATATTGGCGAAGTCCCGATTATAACCTTGTAAGATTCTTCTTCACATTGGCTGCTGCACTTAT GGTTGGAACAATCTTCTGGAAAGTTGGCACTAAGAGGGATAACAGCAATGATCTGACCATGGTCATTGGAGCAATGTATGCTGCTGTGTTATTTATCGGT ATCAACAATTGCTCTTCGGTTCAGCCAATCGTTGCAGTAGAAAGAACAGTGTTTTATCGCGAAAGAGCAGCTGGAATGTACTCGGAATTGCCATATGCAC TCTCACAGGTTGTGTCTGAAATACCATACGTCTTGATACAAACAACATACTACACATTGATAGTGTATGCCATGATGTCATTTCAATGGACAGCGGCAAA ATTCATGTGGTTCTATTTCATCAGCTTCTTCTCATTCCTCTACTTCACTTACTATGGAATGATGACAGTGTCAGTCACTCCAAACCACCAAGTGGCAGCC ATCTTTGCAGCTACATTCTATGCTCTGTTCAATCTCTTCTCCGGCTTCTTCATCCCAAGGCCGAGGATTCCTAAATGGTGGGTATGGTACTACTGGATCT GCCCTGTGGCATGGACTGTGTATGGACTTATTTTGTCGCAGTACGGTGATGTAGAGGATACCATTAAAGTTCCTGGAGTGTCCCCTGATCCAACAGTCAA GTGGTATGTGGAAAACCACTTTGGCTATGATCCAAACTTCATGGCTCCTGTTGCTGTGGTGTTGGTTGCATTTCCTTCCTTTTTTGCCTTTGTGTATGCT TATTGCATCAAGACCCTCAATTTCCAATCAAGATAA
AA sequence Show only first row Show all	>Lus10025824 pacid=23177598 polypeptide=Lus10025824 locus=Lus10025824.g ID=Lus10025824.BGIv1.0 annot-version=v1.0 MEGTERVRESARRPGHSRSLTRSISRSLSRASWGMEEVFAAGSGRQYSRRSSMHGDQDEEALKWAAIERLPTYDRLRTTIMKSVMDDNNNNNNRNLPSHK QVDVARLDDADRQQFIDHIFKVAEEDNEKFLKKFRQRIDKVGIRLPTVEVRFEHLTIEANCFIGDRALPTLPNVARNIVESGLNKIGIHLAKQTKLTILK DVSGIIKPSRMALLLGPPSSGKTTLLLALAGKLDPNLKVRGDITYNGHGMNEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRYDLLSELARR EKEAGIFPEADVDLFMKATAMKGVESSLITDYTLKILGLDICKDTIVGDDMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI AHLTDATIFLSLLQPAPETFDLFDDIILLSEGQIVYQGPRQHILEFFSSCGFHCPERKGTADFLQEVTSQKDQEQYWRHRSKRYEYVSVSEFVQRFKRFH VGMRQDNELSVPYDRSQGHKAALVYDKYTVPKLELLKASWDKEWLLMQRNSVVYVSKTIQMIVVAVIASTVFLRTRMKQRSIDDGGAYIGALIFAMIHNM FNGFAELSLMIKRLPVFYKQRDLLFHPPWTFTLPTFLLGVPSSILESTVWMVVTYYTIGYAPEASRRVNYLLFFKQFLVVFLIQQMAAGTFRLIAGVCKT FIIANTGGALTILLIFLLGGFLLPKGQIPVWWEWAYWVSPLSYGYNALAVNEMTAPRWMNQLGPNNITSLGVQVLMAFDVPTNKNWYWIGTGALLGFAIL FNVLFTFSLMYLSPPGKQQAVISEETARDMEGDSKHTPRLVRLESSKDTLPRALSTRDGNNTREVAMMRMSSRTNPNISNTNGDSAALDAAGGVAPKRGM VLPFTPLAMSFDSVNYYVDMPPEMKEQGVAEDRLQLLREVTSSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGFPKKQETFARISGYCE QTDIHSPQVTVRESLIFSAFLRLPKEVSKEEKMKFVDEVMELVELENLKDGIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSLKIVEYFESIPGVPKIKEKYNPATWMLEVSSIAAEVRLGIDFAEHYKRSS LCQRNKALVKELSTPPPGSKDLYFATQFSQPIWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRDNSNDLTMVIGAMYAAVLFIG INNCSSVQPIVAVERTVFYRERAAGMYSELPYALSQVVSEIPYVLIQTTYYTLIVYAMMSFQWTAAKFMWFYFISFFSFLYFTYYGMMTVSVTPNHQVAA IFAATFYALFNLFSGFFIPRPRIPKWWVWYYWICPVAWTVYGLILSQYGDVEDTIKVPGVSPDPTVKWYVENHFGYDPNFMAPVAVVLVAFPSFFAFVYA YCIKTLNFQSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	0	1
AT1G24560			unknown protein		Lus10038257 [exp]	2.0	0.8550
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	2.8	0.8306
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	5.9	0.7978
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	7.9	0.8158
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	10.0	0.7857
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	13.1	0.7988
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	13.7	0.7879
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	16.4	0.7528
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	16.4	0.7863
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	17.1	0.7959

Compare expression of checked genes

Lus10025824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.