Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79760 174 / 3e-51 DTA4 downstream target of AGL15-4 (.1) AT2G38500 64 / 6e-11 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 52 / 5e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11150 49 / 5e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 46 / 4e-05 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 44 / 0.0001 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 44 / 0.0001 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 44 / 0.0001 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10500 42 / 0.0004 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 42 / 0.0004 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038277 [exp] 627 / 0 AT1G79760 170 / 1e-49 downstream target of AGL15-4 (.1) Lus10014134 [exp] 47 / 2e-05 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10006709 [exp] 46 / 3e-05 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10032930 [exp] 46 / 3e-05 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024230 [exp] 45 / 6e-05 AT3G19000 149 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015573 [exp] 45 / 0.0001 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 44 / 0.0001 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 44 / 0.0002 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10027399 [exp] 44 / 0.0002 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189400 [exp] 361 / 5e-123 AT1G79760 170 / 4e-50 downstream target of AGL15-4 (.1) Potri.011G047800 [exp] 337 / 7e-113 AT1G79760 103 / 1e-24 downstream target of AGL15-4 (.1) Potri.016G134500 [exp] 88 / 3e-19 AT2G38500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069800 [exp] 47 / 2e-05 AT3G11150 263 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 46 / 3e-05 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 45 / 4e-05 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 45 / 5e-05 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 44 / 9e-05 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 44 / 9e-05 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 44 / 0.0001 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025825 pacid=23177438 polypeptide=Lus10025825 locus=Lus10025825.g ID=Lus10025825.BGIv1.0 annot-version=v1.0 ATGGAAGCTTCACCACATTCCATCCCAGAAACTCACCACGTTGATTTCAGAGCTCCACCCCCTTCTCCGATCGCGTCAGGGAGGCGATCGTCCTTCACCA ACGATGCTGTCCTCACCGAATATCTGGAGAACTCATTGCGAGTCCCGGCATTGATACTTCCTGACAGAATATTCCCCAGCCATAAGATCCTTGAAACACC TCAAGTGGTTGATTTCCGGTCACTGCAAAATGGCGATTTCACTCGTCAGTTGGGATGTGATATGGATTCCCTGGCAAGATTGGGGTGCTTCCAACTTGTT AACCATGGGATTTCTAGTGAATCTGTGAGGTCAGCCATGGATTTGGCTCAGGAAATCTTCAATGTTCCCGTGGACAAAAGGGCAATGGTGATGGTGTCCA CTGAGAAGCCATATGGGTTTGAGGAGGAGATCATCCAGCAGGATGGTGATGATGATAAGGAAGAGATTATTAGCAATTTGAGTGAAGAATTTGTTTGGTG TAGAGATGGAAGTTTGAAGTTAGAGATGGAGGCACTTTTGGGTTATAGCTACTCCAATTTCAGTGTGAAAATGGAAGCTCTGATGTCCAACATAGAGGCA GTGGGAGAGAGGTTGCTAGGAGTTGTGAGGCAAAAGATGGAGTTGGAAAGTTTGGCAAATGATCATCAAAATGAAATGGTGATGCAGCTGGATGAGGAGG AGGAGGATAAGGATCATCATGATGATATGGGTCGAGTTGCGGAACAATTGACTTGCTGCTACCTTCGAAAGCACCGGGGAAATGTTCCGGCAGAGAGGTG GGAGAGATCACTTAGGTATGATGTGATAAAGATGCTGATAAGAGGCACTGATCACTCTCATGCCTTGTGCTTTCACATTTGTAATGCCTCCTCAGAGTTT CATGTTTACTCCAAGAAAGGTTGGATTTCTTTCTCCCCTGAGAAAGATGCTCTAGTTGTCACAATTGGAGATCAAATTCAGGCTATGAGCAATGGGGAGT TCAGACATGTGGTAGGGAGGCCAATGGTTAAAAGTGGAGAAGAAGATGACAGTCCTCCTGATAGTAACTCGATTTCAATGGCGTTTATGTATTCACCTCC ACCACCCACCATCAACAGTAGTAGTAACAATCAAATGAAGGAGGAAAATACTATTTCAATCAAACAACAAGCAATAGTAGCCCTTGTTTTCACTCTTATT TGCCAAATTTTGGCTTTTCTTTATAAGAATTTTTAA
AA sequence Show only first row Show all	>Lus10025825 pacid=23177438 polypeptide=Lus10025825 locus=Lus10025825.g ID=Lus10025825.BGIv1.0 annot-version=v1.0 MEASPHSIPETHHVDFRAPPPSPIASGRRSSFTNDAVLTEYLENSLRVPALILPDRIFPSHKILETPQVVDFRSLQNGDFTRQLGCDMDSLARLGCFQLV NHGISSESVRSAMDLAQEIFNVPVDKRAMVMVSTEKPYGFEEEIIQQDGDDDKEEIISNLSEEFVWCRDGSLKLEMEALLGYSYSNFSVKMEALMSNIEA VGERLLGVVRQKMELESLANDHQNEMVMQLDEEEEDKDHHDDMGRVAEQLTCCYLRKHRGNVPAERWERSLRYDVIKMLIRGTDHSHALCFHICNASSEF HVYSKKGWISFSPEKDALVVTIGDQIQAMSNGEFRHVVGRPMVKSGEEDDSPPDSNSISMAFMYSPPPPTINSSSNNQMKEENTISIKQQAIVALVFTLI CQILAFLYKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	0	1
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	1.0	0.8421
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	6.7	0.7937
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	7.3	0.8058
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	8.4	0.7669
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	8.5	0.7641
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	12.7	0.7683
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	13.7	0.7394
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	13.8	0.7752
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	14.1	0.7581
AT1G23300			MATE efflux family protein (.1...		Lus10036852 [exp]	17.8	0.6384

Compare expression of checked genes

Lus10025825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.