Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15215 236 / 2e-77 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein AT3G18380 154 / 1e-44 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038276 [exp] 509 / 0 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 187 / 3e-57 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10013684 [exp] 153 / 4e-44 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10017944 [exp] 152 / 1e-43 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10005480 [exp] 114 / 1e-31 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 99 / 7e-25 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10006038 [exp] 40 / 0.0003 ND 40 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189200 [exp] 247 / 6e-82 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.018G046200 [exp] 179 / 4e-55 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.011G097500 [exp] 154 / 8e-45 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.001G373300 [exp] 143 / 7e-40 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025826 pacid=23177566 polypeptide=Lus10025826 locus=Lus10025826.g ID=Lus10025826.BGIv1.0 annot-version=v1.0 ATGGAACCCAGTTTTCAGTCAGTGACGACCTACGACCACCATTCAGCGTTTCGTCAGCTGCTGCAGCCAGCCACGGATGGCGATGATTTTGAATTTACTC TTGCTGAGATGATGAAAATGAAGAACATATACAAGCAGATAGGGGAAGAGGCATTAGCTCCTCAGTTTTGCCAAAACCTTGCCTCGAGTTTTAGTGTATC GCCAAATAGAAGTGGGAAGCCAGCCATAACATGGCGGCAGGTGCATAATTGGTTCTTCCACAAACATAAGCCATCTGAAGCTACACCGTCGCCTATGCCT CTCAAATTCTGCATCGATCTGTCAGGTCATACTGGGATGGGGAATATTGTACTACCAGTAAGCTTAACGAAGCATAAAGGTGCAGAGGCTAGCGATCTCC CTGAGTTGATGTATGAAGTTAAATCTTCGAAAGACTATGCTGGGGAGGGAGCATCTGTACCACAGTCTAGTATGATCTTGCGTCATTCCTCAATTACAGA GTTCTTTGTTCTGGAGGTGCGAGTGCGTTATGCTGGCTACCGTAATACGGATGATGAATGGGTGAATCTGAAGAGAGCCGTGCGTGAAAGATCTATACCT TTAGAGCCCTCGGAATGTCACAAGGTCGAAGTTGGAGATCTCGTACTGTGCTTCCGGGAAAGATACGAGCAGGCAGTGTATTACGATGCTCATGTGGTGG AGATCCGAAGGCAAATGCATGATTCAGAGGGCTGCAAGTGCATCTTCCTTGTCCGCTATGACCTTGATCATGTTGAGGATAAAGTTGGGTTGGAGTGGAT ATGTCGGAGGCCAGAGGGCGAGAGAAATAATGACAAGGACTTAGAACTACCTCCCAAAAGCATCTTCTACTAG
AA sequence Show only first row Show all	>Lus10025826 pacid=23177566 polypeptide=Lus10025826 locus=Lus10025826.g ID=Lus10025826.BGIv1.0 annot-version=v1.0 MEPSFQSVTTYDHHSAFRQLLQPATDGDDFEFTLAEMMKMKNIYKQIGEEALAPQFCQNLASSFSVSPNRSGKPAITWRQVHNWFFHKHKPSEATPSPMP LKFCIDLSGHTGMGNIVLPVSLTKHKGAEASDLPELMYEVKSSKDYAGEGASVPQSSMILRHSSITEFFVLEVRVRYAGYRNTDDEWVNLKRAVRERSIP LEPSECHKVEVGDLVLCFRERYEQAVYYDAHVVEIRRQMHDSEGCKCIFLVRYDLDHVEDKVGLEWICRRPEGERNNDKDLELPPKSIFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10025826 [exp]	0	1
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10037009 [exp]	7.1	0.7534
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	15.2	0.7057
AT5G30490			unknown protein		Lus10017101 [exp]	30.9	0.7793
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	54.2	0.7533
AT2G35035		URED	urease accessory protein D (.1...		Lus10007861 [exp]	57.7	0.7489
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	62.2	0.7656
					Lus10037282 [exp]	64.7	0.7608
AT5G17620			unknown protein		Lus10001340 [exp]	66.8	0.7376
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	70.9	0.7510
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	88.3	0.7386

Compare expression of checked genes

Lus10025826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.