Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 1019 / 0 Protein kinase family protein (.1.2) AT3G13670 955 / 0 Protein kinase family protein (.1) AT5G18190 947 / 0 Protein kinase family protein (.1) AT3G03940 945 / 0 Protein kinase family protein (.1) AT3G03930 371 / 3e-124 protein kinase-related (.1) AT4G26100 201 / 2e-57 CKL1, CK1 casein kinase 1 (.1) AT2G19470 201 / 2e-57 CKL5 casein kinase I-like 5 (.1) AT1G03930 199 / 2e-56 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G57015 197 / 4e-56 CKL12 casein kinase I-like 12 (.1) AT3G23340 197 / 7e-56 CKL10 casein kinase I-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037565 [exp] 1063 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 1046 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10005479 [exp] 1004 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10042455 [exp] 970 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 969 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 936 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 884 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 878 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 867 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046400 [exp] 1043 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 1033 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 1008 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 990 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.001G009700 [exp] 967 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 965 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 956 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G197600 [exp] 206 / 4e-59 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 206 / 9e-59 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 203 / 1e-57 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025827 pacid=23177624 polypeptide=Lus10025827 locus=Lus10025827.g ID=Lus10025827.BGIv1.0 annot-version=v1.0 ATGCCATTACTGCGTAGTGGAGTGCGCAAAGGCCGTGTAGCAGCAACAGCTGAGCAGCAGCCGAGTCCTGTTGAAACAGGGCAGGCGATTGCAACGAGGA CTCGACGGAGGCGTGCTGTGGCCGCGGCGGGAAACGACTTCATTAATCCGATTAACCAGGAGGAGGCGGCGGTGAAGGTGAACGTAGCGTCTGTTGACGC AGTTGCGTTAGCTGCGGCAGCTAAACCTCAGGAGGATAGGGGGTTTCAAGGAGAAATAAGAGCTTGTGTAGGAGGCGAAAAGGGAATGGATGATCGTAAG AGTGGTGGACGAAGCGAAGACAAGGGGAACGCTGGCGATGATGAAGGAGGTACCTCCCCCATTCCAGAGAAGGTTCAGGTTGGAGGTTCTCCATTGTATA GAGTAGAAAAGAAGTTGGGGAAAGGAGGCTTTGGTCAAGTATATGCTGGTCGACGTTTTGGTGCAGTTAATACGGGCGAGAGAACTGGTCCAGGGGCTGT GGAGGTGGCATTAAAATTTGAGCACCGAAGTAGTAAAGGATGTAATGAGGGACCGCCATCTGAATGGCAGATTTACAGCAATCTTGGTAGCTGTCATGGT GTTCCTCGAGTCCATTTCAAGGGGCGGCAGAGTGACTATTATATCATGGTTATGGATATTCTTGGGCCGAGCTTATGGGATGTTTGGAATAATAATTCAC AGACGATGTCTATAGAAATGGTTGCATGTATCGCAATTGAGGCAATATCCATATTGGAAAGGATGCACTCTAAAGGTTATGTCCATGGAGATGTAAAGCC TGAGAATTTCTTGCTTGGTCAATCGGGAACTTCTGAGGAGAAGAAGCTTTTCCTTGTTGATCTTGGATTAGCTGCTAGATGGCGGGATATTTCAACTGGT CAGCATGTTGAGTATGATCAAAGGCCAGATGTTTTCAGGGGAACAGTTCGGTATGCAAGTGTTCATGCCCATTTGGGGAGGACTGGAAGCAGGAGAGATG ACCTAGAATCGCTGGCTTACACTCTTGTTTTTCTTCTCCGTGGACGCTTACCTTGGCAAGGCTTCCAGGGAGAGAACAAAAGTTTTCTTGTATGTAAGAA AAAGATGGCTACATCCCCTGAAGGACTCTGCTGCTTCTGCCCGGTGTCTTTCAAAAACTATGTTGAATATGTGGTGAATTTAAAGTTCGACGAGGAGCCT GATTATGCAAAATGCATTTCATTTTTTGATGGGATTGTTGGACTGAATCCAAGTGGGCGGCCAATTAACACAGAGGGTGCTCAGAAGGTTGGTCAGAAAA GAGGACGGTTAACCATAGAGGATGATGAGGATGAACAACCTAAGAAGAAAATTCGGATCGGCATGCCTGCTAGTCAATGGATCAGTGTATACAGTGCTCG CAGGCCTATGAAGCAGAGGTATCATTATAATGTAGGCGAGACAAGGTTGGTTCATCATATTGAAAAAGGAAATGAAGATGGATTATACATTAGCAGTGTT GCTTCAGCTCAAAATTTATGGGCACTCATCATGGATGCTGGTACTGGTTTTACTTCACAAGTCTACCAGCTCTCCCCACAATTTCTGAATAAAGAATGGA TAATGGAGAACTGGGAGAAGAGCTATTACATCAGTGCCATAGCTGGAGCTACGAATGGAGGCTCATTCGTTGTGATGTCCAAGGGTACACATTACGAACA GCAGTCGTATAAAGTGAGTGACTCCTTCCCTTGCAAATGGATCAATAAGAAGTGGAAGGAGGGGTTTCATGTCACCTCAATGGCCACGTCAGGGAGTAGG TGGGGAATCGTCATGTCCCGTGGTGCCGGATTTACTCAACAGGTAGTGGAATTGGATTTCCTGTACCCGAGCGATGGGATCCATCGGCGATGGGAGAAGG GTTACCGCATCACAGCAACTGCAGCAACCTCTGACCAAGCAGCATTCATCCTTAGTATACCTAGAAGAAAACCCAACGACGAAACACAGGAGACTCTTCG AACCTCTGCTTTTCCAAGCACTCATGTGAAGGATAAATGGGGGAAGAATCTGTACATTTCATCGGTTTGTTTTGGACGAACAGTGTCTTGA
AA sequence Show only first row Show all	>Lus10025827 pacid=23177624 polypeptide=Lus10025827 locus=Lus10025827.g ID=Lus10025827.BGIv1.0 annot-version=v1.0 MPLLRSGVRKGRVAATAEQQPSPVETGQAIATRTRRRRAVAAAGNDFINPINQEEAAVKVNVASVDAVALAAAAKPQEDRGFQGEIRACVGGEKGMDDRK SGGRSEDKGNAGDDEGGTSPIPEKVQVGGSPLYRVEKKLGKGGFGQVYAGRRFGAVNTGERTGPGAVEVALKFEHRSSKGCNEGPPSEWQIYSNLGSCHG VPRVHFKGRQSDYYIMVMDILGPSLWDVWNNNSQTMSIEMVACIAIEAISILERMHSKGYVHGDVKPENFLLGQSGTSEEKKLFLVDLGLAARWRDISTG QHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGFQGENKSFLVCKKKMATSPEGLCCFCPVSFKNYVEYVVNLKFDEEP DYAKCISFFDGIVGLNPSGRPINTEGAQKVGQKRGRLTIEDDEDEQPKKKIRIGMPASQWISVYSARRPMKQRYHYNVGETRLVHHIEKGNEDGLYISSV ASAQNLWALIMDAGTGFTSQVYQLSPQFLNKEWIMENWEKSYYISAIAGATNGGSFVVMSKGTHYEQQSYKVSDSFPCKWINKKWKEGFHVTSMATSGSR WGIVMSRGAGFTQQVVELDFLYPSDGIHRRWEKGYRITATAATSDQAAFILSIPRRKPNDETQETLRTSAFPSTHVKDKWGKNLYISSVCFGRTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	1.0	0.8715
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	1.4	0.8642
AT5G43160		QWRF9	QWRF domain containing 9, Fami...		Lus10007759 [exp]	3.3	0.8322
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	4.6	0.8441
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10041352 [exp]	6.0	0.8342
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	8.7	0.8270
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	11.8	0.8478
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	11.9	0.8603
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	12.2	0.8477
AT5G45030			Trypsin family protein (.1.2)		Lus10038347 [exp]	17.7	0.8096

Compare expression of checked genes

Lus10025827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.