Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 133 / 7e-39 unknown protein AT3G16330 127 / 1e-36 unknown protein AT4G29110 88 / 2e-21 unknown protein AT4G32860 46 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038274 [exp] 348 / 1e-123 AT3G16330 124 / 2e-35 unknown protein Lus10014153 [exp] 157 / 9e-49 AT4G29110 84 / 1e-20 unknown protein Lus10037566 [exp] 154 / 1e-47 AT1G52140 79 / 2e-18 unknown protein Lus10034944 [exp] 91 / 7e-23 AT1G52140 100 / 3e-27 unknown protein Lus10012967 [exp] 86 / 3e-21 AT1G52140 105 / 5e-29 unknown protein Lus10006040 [exp] 57 / 9e-10 AT1G52140 78 / 2e-17 unknown protein Lus10005478 [exp] 56 / 2e-09 AT1G52140 89 / 2e-21 unknown protein Lus10025041 [exp] 39 / 0.0007 AT5G38700 150 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188900 [exp] 216 / 1e-71 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 176 / 7e-56 AT1G52140 129 / 1e-37 unknown protein Potri.018G086500 [exp] 141 / 5e-42 AT4G29110 139 / 3e-41 unknown protein Potri.006G236700 [exp] 100 / 3e-26 AT4G32860 94 / 4e-24 unknown protein Potri.018G046500 [exp] 100 / 5e-26 AT1G52140 94 / 1e-23 unknown protein Potri.014G139900 [exp] 92 / 4e-23 AT1G52140 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025828 pacid=23177527 polypeptide=Lus10025828 locus=Lus10025828.g ID=Lus10025828.BGIv1.0 annot-version=v1.0 ATGGAGCAAAATCTACCGTTGATGACGAAGAAAGCATGGGGGATCGTACGGGTGCTGTTCTTCATGCTGAGGAAAGGAATAATCTCCAAAAGAAAGCTCC TCCTAGATCTCAACATGCTTATGAAGCGCGGCAACAAAATCGCCTCCAAGGCCATCGGCAACTTCCTCATCTTCAACCACCACCGTAACGATATTCATTC CGGTGCCACCTCATCGTCATCCCCACCTGATGCTTACGAGTTCAGCTGCAGCAACACCCCTAACTACACCTTCCACCTCCCCACCACCAAACGCAGCTTC TTGTCCTGTGCTTTCCACGCTCCCCCCACCAAGCACGACGACAACGACAATGACCTGGACACTGTCAACGCCGTCAAGATGGCCCTCGAGATGTTCAACT ACAACAACAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATATTGTGTACGCGCCGTCGCCAATGCTGCCCGGGTTCGGGAAGAGTCCCGTGGGGAG GCAGCTAAGGATAACCGACTCGCCGTTCCCGTTGAGGGAAGAGGACCATGGAGATAACGGCGTTGTTGACCGGAAGGCTGGCGAGTTCATTGCCAATTTC TATAGGGAGCTTCAGAAGCAACGTGGAATCATGGACTGA
AA sequence Show only first row Show all	>Lus10025828 pacid=23177527 polypeptide=Lus10025828 locus=Lus10025828.g ID=Lus10025828.BGIv1.0 annot-version=v1.0 MEQNLPLMTKKAWGIVRVLFFMLRKGIISKRKLLLDLNMLMKRGNKIASKAIGNFLIFNHHRNDIHSGATSSSSPPDAYEFSCSNTPNYTFHLPTTKRSF LSCAFHAPPTKHDDNDNDLDTVNAVKMALEMFNYNNSSSSSSSSSSSNIVYAPSPMLPGFGKSPVGRQLRITDSPFPLREEDHGDNGVVDRKAGEFIANF YRELQKQRGIMD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52140			unknown protein		Lus10025828 [exp]	0	1
AT1G52140			unknown protein		Lus10012967 [exp]	1.7	0.9296
					Lus10003132 [exp]	2.0	0.9211
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	2.0	0.9364
AT3G16330			unknown protein		Lus10038274 [exp]	2.2	0.9481
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	3.2	0.9211
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	5.5	0.9068
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	6.2	0.8789
					Lus10029150 [exp]	6.9	0.8477
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	8.8	0.9022
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	9.5	0.8836

Compare expression of checked genes

Lus10025828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.