Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25830 211 / 2e-66 GATA GATA12 GATA transcription factor 12 (.1) AT4G32890 202 / 3e-63 GATA GATA9 GATA transcription factor 9 (.1) AT2G45050 172 / 6e-52 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 164 / 5e-49 GATA GATA4 GATA transcription factor 4 (.1) AT5G66320 145 / 9e-41 GATA GATA5 GATA transcription factor 5 (.1.2) AT4G34680 137 / 2e-38 GATA GATA3 GATA transcription factor 3 (.1.2) AT4G36240 131 / 1e-36 GATA GATA7 GATA transcription factor 7 (.1) AT3G51080 127 / 3e-34 GATA GATA6 GATA transcription factor 6 (.1) AT3G54810 124 / 5e-33 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 123 / 7e-33 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038273 [exp] 530 / 0 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10037572 [exp] 323 / 2e-110 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10011430 [exp] 315 / 2e-107 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10028178 [exp] 172 / 6e-52 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10023684 [exp] 125 / 1e-34 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011762 [exp] 122 / 4e-33 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10031096 [exp] 117 / 9e-33 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10037398 [exp] 121 / 3e-32 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10041313 [exp] 121 / 3e-32 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188500 [exp] 272 / 2e-90 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.018G044900 [exp] 235 / 4e-75 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.006G237700 [exp] 231 / 1e-73 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.014G058600 [exp] 164 / 7e-49 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.007G016600 [exp] 160 / 3e-46 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.002G142800 [exp] 152 / 1e-44 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.005G117600 [exp] 146 / 3e-41 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.009G123400 [exp] 145 / 7e-41 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.010G223300 [exp] 141 / 3e-39 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G161500 [exp] 137 / 1e-37 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025829 pacid=23177637 polypeptide=Lus10025829 locus=Lus10025829.g ID=Lus10025829.BGIv1.0 annot-version=v1.0 ATGGAGCCATCTGACTTCTTCATGGCTGCCTACTACAACACTTCCGTCGTCCACTCCACCAACTTCTTGCCGACAGAGACCAACCCCACCGCCGACCATG CTAATTTCGCCGTCGACGACCTTCTTGATTTCCCCACCGACGACGACGCCATTATGACCGATGGCTTCTTCGACAATCTTGCCAAAAATTGTGATTCCCC TGCATTTACCCCCAACGACAGCTCCAATTCCTCCTCCACAACTTCCGCCGGCTATCAGAGCATCGCCGATTCCCACTTCTCCAGCGAGCTCTGCGTTCCG TACGATGACATGGCTGAACTAGAGTGGCTCTCAAATTTTGTGGACGACACGTCGTTTTCAACGGACCACCAAACACTCCAAACCAACCTCCACATGCTAC CCGGGTCCAAACCCGAGCCAATGGGGCGTAATGCCACCACTACCAACAACAACAACTCGATGTTCCAAGCCGATGCCCCGTTACCCGGTAAGGCTCGATC CAAGCGGTCACGAATTGCTCCGGGCAATTGGACCACCCGTCTTCTCCACCTCACCCCATCAATTAAAGGCGCTTTCAAGAAAAAACAAGAAAGTCCAAAC CCGAACCAGAACTGTTCGGGTTCAGACTCCTCTACTTTGCGAAGATGCCTACATTGCGGGTCTGATAAAACCCCACAGTGGAGGACAGGGCCCATGGGCC CGAAGACACTGTGCAATGCTTGCGGGGTGCGATACAAGTCAGGGAGGTTAGTAGCTGAATACCGCCCTGCAGCTAGTCCGACGTTTGTGCCCGCGAAGCA TTCGAATTCGCATAGGAAGGTGTTGGAGCTGAGAAGGCAAAAGGAGATGCATATGGTTCAGCAGGAGCAGTTCCTTAACCAGAGTAGCGGCATGTTTGGT GATCAATATTTGATTAATCATCACCACACCGATGGCCACAACTTTAGGCATGTGATTTAG
AA sequence Show only first row Show all	>Lus10025829 pacid=23177637 polypeptide=Lus10025829 locus=Lus10025829.g ID=Lus10025829.BGIv1.0 annot-version=v1.0 MEPSDFFMAAYYNTSVVHSTNFLPTETNPTADHANFAVDDLLDFPTDDDAIMTDGFFDNLAKNCDSPAFTPNDSSNSSSTTSAGYQSIADSHFSSELCVP YDDMAELEWLSNFVDDTSFSTDHQTLQTNLHMLPGSKPEPMGRNATTTNNNNSMFQADAPLPGKARSKRSRIAPGNWTTRLLHLTPSIKGAFKKKQESPN PNQNCSGSDSSTLRRCLHCGSDKTPQWRTGPMGPKTLCNACGVRYKSGRLVAEYRPAASPTFVPAKHSNSHRKVLELRRQKEMHMVQQEQFLNQSSGMFG DQYLINHHHTDGHNFRHVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	1.0	0.9380
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	3.5	0.9251
AT1G75590			SAUR-like auxin-responsive pro...		Lus10012426 [exp]	3.7	0.9146
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	7.1	0.9290
					Lus10011622 [exp]	9.3	0.9290
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10019088 [exp]	9.7	0.8862
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	9.9	0.8858
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	12.6	0.9064
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10005075 [exp]	13.2	0.8834
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	18.1	0.9132

Compare expression of checked genes

Lus10025829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.