Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16300 127 / 2e-36 Uncharacterised protein family (UPF0497) (.1) AT1G79780 125 / 5e-36 Uncharacterised protein family (UPF0497) (.1) AT2G35760 44 / 2e-05 Uncharacterised protein family (UPF0497) (.1) AT4G16442 41 / 0.0002 Uncharacterised protein family (UPF0497) (.1) AT4G15630 39 / 0.0008 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038271 [exp] 308 / 1e-107 AT3G16300 158 / 2e-48 Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 44 / 2e-05 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10039060 [exp] 42 / 8e-05 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 42 / 0.0001 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050400 [exp] 200 / 6e-65 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 189 / 1e-60 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 43 / 5e-05 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 43 / 6e-05 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10025833 pacid=23177493 polypeptide=Lus10025833 locus=Lus10025833.g ID=Lus10025833.BGIv1.0 annot-version=v1.0 ATGATGTCAAGCAAAGTCGGAGAGAAAGTGCCGGAGGTTTTCGTGGCAGCGGGGGCGGCGACAGAGAACAGCAGCAACAGCAGCACAACCAGCAGCCCGG TAGTGGTGTCGGCAAAAATGTCAGGCGGTCGTCGGCGGAGAGGTGAAGTAATGCAGGGGACGTTACGGCTGCTGTGCTTGGTGACATCCCTGACCTCGAT GGGTTTCATGGTGACAGCTAAGCAGTCAAGCTCCATCTCCATCTTTGGGTTTATGCTCCCTCTCAATTCCACCTGGTCCTTCTCCACCTCCTTCCAGTAC TTGGTGGGGGTATCAACTGTTGCGGCAGCACATTCGCTATTGCAGCTGCTGATAACATCAGCAAGGCTAATCAAGAACTCTCCCGCCATCCAATCTCGAG CCTACGCCTGGGTGGTGTTCGCGGCTGATCAAGCGATGGCTTACGCGTTAGTGAGCGGGGCAGCAGCATCGGCCGGAGTGAGCAACTTGAACAGGACCGG GATAAGACACACCTCGCTTCCAAACTTCTGCAAGCCACTGAAGAGCTTCTGTGACCATGTAGCGGTGTCAATTGGGTTCACCTTCTTTACCTTTTTCTTG CTGGCCGCCTCTGCTGTTCACCAAGTTCTCTGGCTCTCCAATTCCTCTCCAGTATACTAA
AA sequence Show only first row Show all	>Lus10025833 pacid=23177493 polypeptide=Lus10025833 locus=Lus10025833.g ID=Lus10025833.BGIv1.0 annot-version=v1.0 MMSSKVGEKVPEVFVAAGAATENSSNSSTTSSPVVVSAKMSGGRRRRGEVMQGTLRLLCLVTSLTSMGFMVTAKQSSSISIFGFMLPLNSTWSFSTSFQY LVGVSTVAAAHSLLQLLITSARLIKNSPAIQSRAYAWVVFAADQAMAYALVSGAAASAGVSNLNRTGIRHTSLPNFCKPLKSFCDHVAVSIGFTFFTFFL LAASAVHQVLWLSNSSPVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16300			Uncharacterised protein family...		Lus10025833 [exp]	0	1
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	8.0	0.8686
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	8.4	0.8710
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	10.8	0.8720
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	12.2	0.8775
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	14.7	0.8705
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	19.9	0.8566
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10030401 [exp]	22.3	0.8417
AT3G01790			Ribosomal protein L13 family p...		Lus10032063 [exp]	24.0	0.8724
AT1G65900			unknown protein		Lus10020799 [exp]	25.3	0.8414
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	27.2	0.8536

Compare expression of checked genes

Lus10025833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.