Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52155 322 / 2e-102 unknown protein AT3G11560 126 / 6e-30 LETM1-like protein (.1.2.3.4) AT5G06220 126 / 2e-29 LETM1-like protein (.1.2) AT3G59820 44 / 0.0004 LETM1-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038268 [exp] 1273 / 0 AT3G11560 147 / 4e-37 LETM1-like protein (.1.2.3.4) Lus10038269 [exp] 397 / 4e-131 AT1G52155 437 / 3e-155 unknown protein Lus10021329 [exp] 139 / 2e-33 AT3G11560 976 / 0.0 LETM1-like protein (.1.2.3.4) Lus10017005 [exp] 133 / 1e-31 AT3G11560 975 / 0.0 LETM1-like protein (.1.2.3.4) Lus10029426 [exp] 82 / 7e-16 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187100 [exp] 722 / 0 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2) Potri.001G187300 [exp] 306 / 3e-96 AT1G52155 468 / 3e-167 unknown protein Potri.016G074900 [exp] 153 / 7e-38 AT3G11560 1033 / 0.0 LETM1-like protein (.1.2.3.4) Potri.006G208300 [exp] 145 / 2e-35 AT3G11560 1056 / 0.0 LETM1-like protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [flax] [poplar] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Lus10025835 pacid=23177489 polypeptide=Lus10025835 locus=Lus10025835.g ID=Lus10025835.BGIv1.0 annot-version=v1.0 ATGTCGTTTGGGGTGTACATAACTGGAGTGCTTTTCCAGACTGCTTCATTCGTGTCCTTTCTGCTCATATCTCATGGTTACTGCATCATGTGTGAGCGCC TTTCAGTAACTGAACGCCGCACTACAGCTGCACTTGCTTGTGTCTTTTACATGACTCTAGTTGGGTATAGAGCTTCTGTACCATACTTCACTATTTTGCT TCTTCTCAACTACGTAGTCTCATTCTATCTGATTTTCTACCTCATATCCCAAAACCTATTGCTTTTACAAGAGCAATTAAATTTTATTGAGGATGAGGAT GTGCAAGGAATGCATGGTGCAGTCTATATGAAGTATCTTATGTTCAAGAAATTCCGGAGTGCTATGCAAATAGTCGCAGTTGTAGAAGCTATGATATTCA TCAATGTGGACAATTCCCCAGATCATTACTGGCTACGGCTGCTAGTTAGAGAGTGGGCTCAGTTCTGCATTTTTTCGTTCATAGGATGGACTTTTAGATC GCAAGACTTGGCACCACGTTTCTCAGTCATGCCCACTGTAAAAACTAAAGGAGACAGAATGGTCCCTCCCATTTATAGCATCGAAATGGACGCGGCAACT TTCAAGGAATTCAGCTCTCGTGAATGGCAAATTGGAGTGTGGAAATGTGAAGGTGATGAAGTCTCCTATGCCGGGAAATCATTTGGAGTAAACTTAAATG CTGCTGCACCCGAATTACCCAAGCTAGGTGCTGAAAAACTCAGGAACCCCATTTTCTCTCCAAGGAACAACAGTGTCCGTGGTGGGAGTTTGTTTTCTTC TGGTGTTTCTGTAAGAGTGTTATCCTCTGTGGCCCCAGCCTCTTATTGTGATAATTTTAAGACTGAGAATGGTATTGCTGTCCCCAAAGCTGATAACGAT ACAGTGGAGTTCAGTCGTGTGAATTGTCTTGTATGGGTATTGCATGAATCTGCTTCAAGCTTTTCCCATCAAGTTGAGTCACTTGGCCTGGCAGCAAGTG TCCCAGAGCTTGCATTTGCTTGGAATGGGAAGGATGTCCACGCATGGCACAAACGTATTGCGTATCATGTAGCTGTATATGCTTTGATGAGAACCATAAT GGAGATGGAGCTTTTACTTTCTCATGATCGTCAAAACAATGGATCTCCAGTCAAAGAAATCTTGGCCCCAAATATGAAAGTGCTGGGAGATTATATCGAG AGTCGATTGGGTGCAAAGCATTCAGATCTGGTTGAGTGGTTTAGAGAGGTGGAACTGCCTCGTGTAACAGGGTTTTTTGTCCCCTTCCTGAAGAAGTGGT CAATGGAGTATGCTGGAAGTGGTGTTGCAGGGATTATTTTAGCTATAAGTGGCTGTGCTGCTGTTGGGAAAGTGGGTTCTGGAAAAATTTCTTCGTCAAT GCTTGCTTGTTCTACACAGAATGTACTTGTTGAGCTCATGGATTCTTCACACAATATTGTAGAAGTTGAAAAATTGCATCAGTTAGCGATTGACGCAGGA TTTGAGCACAACTTCCTTTCCCATTTTGGTTCGAAGATCTTGCCATGCAACAAAACTGAAGAACTAGAATTTTGGATTGGCCTGGCTCAAAAAAAGCTAT CAGTAGCATTCTATGATGCACTTTCTATGAAGGTCACAGCCAACTCTTCTTCAAAGGTCCATGCAGATACCTTGGCTACCCTTGGACTATTTGCATATCT GGGACGAAAGACACGATTATTCTTGACGAAAATGGGAATCAAGGATCTTGATGAGCAGCTTAAGGATTTCCTAGGTTACTTGGTCAATGACACAACTGTA AGTTACCTCGAGTGTGGTAGCCTTTTCATTTACCCCGAGATTGCCCATGTTTCAAATTATCAACGGTTCATCGAGGTTGTGACTGATGAAATTGGGTGGC TTGAATTCTACGCTGCATCTTCTTCTCTTAACAATCAAGAAAGGAAAAGATCAAAGCAGCATGCAGTTCAAGCAGAGCAAGAGATCATTCTATCCACAGT CTTCACTGTTTGTTACGATGTCTTCTCTGGCTTTGCTCATTTCAGTCGTTCAACTCAAAAGCCTTTAGATGCCGAATTGTTGGAATTTTTATTCCGGAGT CAAAGTCTTCTAGCTATTTTTCTGGAAGACTACAGAGCAGCTTATGGTAGATTTGGTGAACCAATAAAGCTCTGTGACTCAGGTGCCTCTGACTATGTAC AGCCCCTAAAAGCAAAGAACTTGAACAAGTCATCTCAGAAGCTAGAAGATAACTCTGCCCCTACTTCTGAAGTTAGAAAGGTTAGAAGCAAAGATGAAAC GAAACCCGAGACACCGAGCACTAAACCGAAGCCAAGTTCTCTGGACATGAACATAATCGGTAAATACAGGCTCAAATTGATGTCGAAAACCGCGGATGTA TTGATGGGAACCCAGTTGCTGGTGGATGACATCATTGATGCTTTGGAGCTAATCAAGAAGCAGTTGCGTGGGCAGAGAATTTCAAAGAGGGAAAAGAGGA GACTTGAGAGAACAATGAAAGACCTAGCTTCCCTTGTCCCCATCACAATTCTAATGCTAATTCCTGTGTCTGCAGTAGGCCATGCTGCAATGCTGACAGC TATCCAGAGATACACTCCATGCTTGATTCCTTCTCCTTACTCGTCGGACAGGCTAGACATAGTGAAACAACTGAAGAGAACAAAGAAACTGGAAGTAGAG TCATGGGGAATCCTGGAAGATCTTAGCCCTGGAATTAACAGGGAGGACTCATCCTGTAAAAGACCATAA
AA sequence Show only first row Show all	>Lus10025835 pacid=23177489 polypeptide=Lus10025835 locus=Lus10025835.g ID=Lus10025835.BGIv1.0 annot-version=v1.0 MSFGVYITGVLFQTASFVSFLLISHGYCIMCERLSVTERRTTAALACVFYMTLVGYRASVPYFTILLLLNYVVSFYLIFYLISQNLLLLQEQLNFIEDED VQGMHGAVYMKYLMFKKFRSAMQIVAVVEAMIFINVDNSPDHYWLRLLVREWAQFCIFSFIGWTFRSQDLAPRFSVMPTVKTKGDRMVPPIYSIEMDAAT FKEFSSREWQIGVWKCEGDEVSYAGKSFGVNLNAAAPELPKLGAEKLRNPIFSPRNNSVRGGSLFSSGVSVRVLSSVAPASYCDNFKTENGIAVPKADND TVEFSRVNCLVWVLHESASSFSHQVESLGLAASVPELAFAWNGKDVHAWHKRIAYHVAVYALMRTIMEMELLLSHDRQNNGSPVKEILAPNMKVLGDYIE SRLGAKHSDLVEWFREVELPRVTGFFVPFLKKWSMEYAGSGVAGIILAISGCAAVGKVGSGKISSSMLACSTQNVLVELMDSSHNIVEVEKLHQLAIDAG FEHNFLSHFGSKILPCNKTEELEFWIGLAQKKLSVAFYDALSMKVTANSSSKVHADTLATLGLFAYLGRKTRLFLTKMGIKDLDEQLKDFLGYLVNDTTV SYLECGSLFIYPEIAHVSNYQRFIEVVTDEIGWLEFYAASSSLNNQERKRSKQHAVQAEQEIILSTVFTVCYDVFSGFAHFSRSTQKPLDAELLEFLFRS QSLLAIFLEDYRAAYGRFGEPIKLCDSGASDYVQPLKAKNLNKSSQKLEDNSAPTSEVRKVRSKDETKPETPSTKPKPSSLDMNIIGKYRLKLMSKTADV LMGTQLLVDDIIDALELIKKQLRGQRISKREKRRLERTMKDLASLVPITILMLIPVSAVGHAAMLTAIQRYTPCLIPSPYSSDRLDIVKQLKRTKKLEVE SWGILEDLSPGINREDSSCKRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52155			unknown protein		Lus10025835 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	1.0	0.8371
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	3.2	0.7968
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	12.6	0.8235
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036351 [exp]	16.8	0.8037
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	18.2	0.8097
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	18.4	0.7885
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	19.0	0.7641
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	20.3	0.7870
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	20.7	0.8099
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	23.2	0.7957

Compare expression of checked genes

Lus10025835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.