Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038266 [exp] 547 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025836 pacid=23177513 polypeptide=Lus10025836 locus=Lus10025836.g ID=Lus10025836.BGIv1.0 annot-version=v1.0 ATGCGCGAAGCTTCTCACTCGTCGCGATCGCCGTCGCCGGCAAAGAAATTACCATTACCTCCTCCGCTCCCAATAGATCTCGACGACAACTACTTGAGCT ATCAAGAAACTAGCCGCCGAAAAGAAGCGGGGAATCTCAATAACTCCACCAAGAATTTCATGTCTCCGACGAAATCCTTTGTTTCAAAGCTTAACAATCA CCCTTCCCTGAAGAAAGGACGGATTAATGAATCCCCTGATCATGTCGATGATGGCGCATTCGGGGAGGAGTTTCTTGACGAAGCTGTGATTAGGCCTCAA ATTCTGCGGCACAGGCCAGACAAGCGAAGCAACCTCATCCAGAGAATTGCGTCTGATGATTTTGAGACAGTGAAGGTGGGGGGACATTCCTCAGTTTGCT CTAGGGTATTTGAGTTTTTGCTGCTTTTGATGATCTTGCTACTCTCCAGTGCTTCCATCACTTTAATGAGCACTGATGGCCCTCGCTGCTACTGTACCTG TTATCATCATCACCACTATCTTGACAACTACCCAGTGGCGTTTCTGAGACTAAGAGAGAACAATGGAGCCCCAACATCGCATGATTTCATGGTAGTTGAG CCACCTATGGATGTTGAACAAGCAGGGAAGATGATGGCTGAACATCCTGTTACTGATATGCATATTCAACAAGTGGAAACCTATAGTTCTGGGAATGCTG CACCAATGAAAGCAGCTGTGGAACAAGTGGCTCAAATAATTCTGCATCCAAATGACAAAGGGAGGATTACTCTAGAGAAAGGAAAGGGCAAGGATCTCAG TCCTAAAGCAAACTATCTAGCTAGGAATTGGGGTATTGAATTTGACGATGATGACAATAGGCCGTCCCTGGTGCCTATCTTTGTGGTTACTGCAATTGCT TCAGTGATGGTATTGGTGGTGCTTATCTCCTGCACACTGGTGAGGAAGAAGAGAAATTATAATATCTCAAGGCGCGGTATTGATCATCAGTACCAGCGCC ATTTAGAGCCTGGCTTACTGCACACACAGAATCCTGACATGCCAGAGATATGGAGCAGCAGCAGCAGCTCAGTTAGGGGCAGGGGAGCACCATCACTACA ACAACCCTCTTGGAAGAAATGA
AA sequence Show only first row Show all	>Lus10025836 pacid=23177513 polypeptide=Lus10025836 locus=Lus10025836.g ID=Lus10025836.BGIv1.0 annot-version=v1.0 MREASHSSRSPSPAKKLPLPPPLPIDLDDNYLSYQETSRRKEAGNLNNSTKNFMSPTKSFVSKLNNHPSLKKGRINESPDHVDDGAFGEEFLDEAVIRPQ ILRHRPDKRSNLIQRIASDDFETVKVGGHSSVCSRVFEFLLLLMILLLSSASITLMSTDGPRCYCTCYHHHHYLDNYPVAFLRLRENNGAPTSHDFMVVE PPMDVEQAGKMMAEHPVTDMHIQQVETYSSGNAAPMKAAVEQVAQIILHPNDKGRITLEKGKGKDLSPKANYLARNWGIEFDDDDNRPSLVPIFVVTAIA SVMVLVVLISCTLVRKKRNYNISRRGIDHQYQRHLEPGLLHTQNPDMPEIWSSSSSSVRGRGAPSLQQPSWKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025836 [exp]	0	1
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	6.6	0.7605
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	18.5	0.7588
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10009315 [exp]	32.9	0.7163
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	40.5	0.7088
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	69.2	0.6535
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	92.7	0.6473
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	107.7	0.6204
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	136.1	0.6138
AT3G28670			oxidoreductase, zinc-binding d...		Lus10028219 [exp]	152.0	0.6089
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	179.2	0.6151

Compare expression of checked genes

Lus10025836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.