Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56550 65 / 2e-13 ATOXS3 oxidative stress 3 (.1) AT4G26288 54 / 3e-09 unknown protein AT4G31510 50 / 8e-08 unknown protein AT5G24890 49 / 2e-07 unknown protein AT3G03170 48 / 3e-07 unknown protein AT3G43850 46 / 3e-06 unknown protein AT2G24550 45 / 4e-06 unknown protein AT5G21940 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038265 [exp] 215 / 3e-72 AT5G56550 66 / 9e-14 oxidative stress 3 (.1) Lus10034985 [exp] 72 / 7e-16 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10012939 [exp] 69 / 7e-15 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10043039 [exp] 65 / 4e-13 AT5G56550 69 / 1e-14 oxidative stress 3 (.1) Lus10011137 [exp] 64 / 7e-13 AT5G56550 74 / 2e-16 oxidative stress 3 (.1) Lus10020142 [exp] 49 / 3e-07 AT2G24550 113 / 9e-30 unknown protein Lus10026939 [exp] 49 / 5e-07 AT2G24550 116 / 4e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190700 [exp] 87 / 1e-21 AT5G56550 81 / 4e-19 oxidative stress 3 (.1) Potri.018G008200 [exp] 50 / 1e-07 AT5G24890 131 / 3e-37 unknown protein Potri.006G273100 [exp] 48 / 5e-07 AT5G24890 129 / 1e-36 unknown protein Potri.009G120300 [exp] 47 / 6e-07 AT4G26288 45 / 2e-06 unknown protein Potri.018G048100 [exp] 45 / 6e-06 AT5G21940 110 / 4e-29 unknown protein Potri.004G158800 [exp] 42 / 2e-05 ND / Potri.006G219800 [exp] 41 / 0.0001 AT5G21940 135 / 3e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025837 pacid=23177480 polypeptide=Lus10025837 locus=Lus10025837.g ID=Lus10025837.BGIv1.0 annot-version=v1.0 ATGGGTGCAACTGATCAAATGGTTTTCCAGCATGATTACAATAATTCATCTGCTAGCTCAACCACGATTGGATCAGAATCTCATTCATCTGATTCCTCTA CCTGTTCTAATTCCTTGGAATTAGCTGATGATGCATCTTCTTCTTCTCGGTCTTCTTCTTCATCTTCAGTATCCATCACTATGTTTGGGAAGCATGCTTC AATGTTTGAGCTGTCAGATCTCATGGCTACTCTTCCAATCAAGAGGGGACTCTCGAAATTCTACCAAGGGAGGTCAGAGTCTTTCACATCTCTAGCAAGG GTAATGAGCATTGAGGATCTTGCGAAGAAAGAGGACCCTTACTATAACAACAACAACAGAAGAAAGATGTTGAAAGCATCCAAGAGCTATGCAAATGGTT TTGATGCTTCTTCCAAACCCTATACTAAGAATAACAGAAATAAGGTCTCTTCTTTTCTCAACAACATCACCAGGCTCAGGCCTCCTCTGCTTCTTCCATG TGAAGAAAATAGGCCCTGA
AA sequence Show only first row Show all	>Lus10025837 pacid=23177480 polypeptide=Lus10025837 locus=Lus10025837.g ID=Lus10025837.BGIv1.0 annot-version=v1.0 MGATDQMVFQHDYNNSSASSTTIGSESHSSDSSTCSNSLELADDASSSSRSSSSSSVSITMFGKHASMFELSDLMATLPIKRGLSKFYQGRSESFTSLAR VMSIEDLAKKEDPYYNNNNRRKMLKASKSYANGFDASSKPYTKNNRNKVSSFLNNITRLRPPLLLPCEENRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	0	1
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	2.8	0.9793
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	4.7	0.9761
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10025260 [exp]	5.0	0.9608
AT4G19160			unknown protein		Lus10038244 [exp]	5.7	0.9657
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	5.7	0.9753
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	6.7	0.9755
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	6.9	0.9665
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	7.1	0.9750
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	7.3	0.9601
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	7.7	0.9732

Compare expression of checked genes

Lus10025837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.