Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51980 595 / 0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G16480 589 / 0 MPPALPHA mitochondrial processing peptidase alpha subunit (.1) AT3G02090 172 / 1e-47 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038262 [exp] 907 / 0 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10035000 [exp] 634 / 0 AT1G51980 631 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 531 / 0 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1) Lus10040886 [exp] 171 / 1e-46 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 169 / 2e-46 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 169 / 3e-46 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004938 [exp] 103 / 2e-24 AT3G02090 546 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191100 [exp] 707 / 0 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.008G193200 [exp] 619 / 0 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.010G036700 [exp] 613 / 0 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 166 / 2e-45 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.004G118900 [exp] 164 / 1e-44 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10025839 pacid=23177518 polypeptide=Lus10025839 locus=Lus10025839.g ID=Lus10025839.BGIv1.0 annot-version=v1.0 ATGTACAGAAACGCAGCTTCACGGCTCGGGGCTCTCAAGGGCCGTGTGCCACGCAATGTGGGTACCACGAGGTATGCAACTTCAAGTGCAGTTGCTGCTA CGACGTCATCCCCGGGACTTTTCAGCTGGCTGATCGGTGAACGGTCTAGTTCCTTTCCTCCTTTGACTTCTCCATTTGAAGGTGTTTCTTCCCCACAGTC ATTGCCGGATTATGTTGAACCTAGCAAGATTAAGTCAAAAACCCTTTCCAATGGACTGACAATTGTTTCTGAGGCTTCTTCGCATCCTGCAGCATCAATA GGGATGTACGTTGATTGTGGTTCTATCTACGAGACACCCATGTCATGTGGAGCAACTCACTTGCTTGAAAGAATGTCATTCAAAAGCACTAGAAATAGGA GTCACTTTCGCATTGTGAGGGAAGTTGAGGCCATTGGTGGTACGATAGCAGCCTCAGCTTCACGGGAGCAAATTGGATACACTTTTGATGCCCTTAAAAC CTATGTTCCTGAAATGGTGGAATTGCTCATTGACTCTGTGAGGAATCCTGTCTTCATTGATTGGGAAGTCAACGAGGAGCTGAAAAGGGTGAAGAATGAA CTCAGCCAAATCTCTAACAATCCCCAAGGTTTACTCTTGGAGGCAATTCATTCTGCTGGATATATTGGTGCATTGGCAAATCCTCTTTTAGCTCCAGAAG AAGCATTGAGCAGACTGAATAGTGACATTTTGGAGGAATTTGTGGCTGAGCATTACACAGCTCCTAGGATGATCCTTGCTGCATCAGGGGTTGAATTCGA GGAGCTTTTATCTGTTGCAGAGCCACTTCTGTCTGACCTTCCAGTTGTCCAACGTCCCGAGGCACCAAAATCTCAATATGTTGGAGGGGATTATCGTCGC CAGGCAGATTTACCGGTGACACATATTGCTCTTGCTTTTGAAGTACCTGGAGGCTGGCATAACGAAAAAGAAGCTATCATTTTAACTGTGCTCCAGATGC TTATGGGAGGAGGTGGCTCGTTTTCTGCTGGGGGGCCAGGAAAAGGAATGCACTCACGATTATATCTCCGTGTCTTGAATAACTACCAGCAGCTTCAGTC TTTTTCTGCATTCAACAGCATCTTCAATGATACTGGATTGTTTGGCATTTATGCTACCACTACATCTGATTTTGTGGGGAAGGCAGTTGATATTGCCGCA GGAGAATTGCTTTCCATTGCCTCTCCAAAACAAGTTACTGAGACGCAGCTTAACCGTGCAAAGGAGGCCACAAAATCTGCCGTTCTTATGAATCTGGAGT CTAGAATGATTGTAGCTGAAGATATTGGGAGGCAGTACTTGACATACGGTGAAAGGAAGCCGGTGGATAATTTCTTGAAGGCGGTGGATGAGATAACGTT GAAGGACATAAGTGATATTGGGCAGAAGTTGATCTCCTCACCTCTAACAATGGCATCATATGGCGACGTCATTAACGTCCCAAGCTACGGGTCAGTAAGC GCTATGTTCCATTCAAAATGA
AA sequence Show only first row Show all	>Lus10025839 pacid=23177518 polypeptide=Lus10025839 locus=Lus10025839.g ID=Lus10025839.BGIv1.0 annot-version=v1.0 MYRNAASRLGALKGRVPRNVGTTRYATSSAVAATTSSPGLFSWLIGERSSSFPPLTSPFEGVSSPQSLPDYVEPSKIKSKTLSNGLTIVSEASSHPAASI GMYVDCGSIYETPMSCGATHLLERMSFKSTRNRSHFRIVREVEAIGGTIAASASREQIGYTFDALKTYVPEMVELLIDSVRNPVFIDWEVNEELKRVKNE LSQISNNPQGLLLEAIHSAGYIGALANPLLAPEEALSRLNSDILEEFVAEHYTAPRMILAASGVEFEELLSVAEPLLSDLPVVQRPEAPKSQYVGGDYRR QADLPVTHIALAFEVPGGWHNEKEAIILTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNNYQQLQSFSAFNSIFNDTGLFGIYATTTSDFVGKAVDIAA GELLSIASPKQVTETQLNRAKEATKSAVLMNLESRMIVAEDIGRQYLTYGERKPVDNFLKAVDEITLKDISDIGQKLISSPLTMASYGDVINVPSYGSVS AMFHSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51980			Insulinase (Peptidase family M...		Lus10025839 [exp]	0	1
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Lus10023287 [exp]	15.4	0.6539
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	17.1	0.7563
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	26.4	0.7450
AT5G38880			unknown protein		Lus10034622 [exp]	40.7	0.6714
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	48.4	0.6894
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	51.6	0.6987
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	59.9	0.7080
AT4G17910			transferases, transferring acy...		Lus10001270 [exp]	71.7	0.6769
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10032494 [exp]	120.0	0.6780
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10004916 [exp]	133.3	0.6387

Compare expression of checked genes

Lus10025839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.