Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30200 411 / 1e-134 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT5G57380 276 / 2e-83 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT2G18880 169 / 5e-45 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT3G24440 134 / 1e-32 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18870 93 / 6e-21 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038260 [exp] 1067 / 0 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019394 [exp] 261 / 4e-78 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 173 / 2e-46 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 167 / 7e-44 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 130 / 4e-32 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 127 / 5e-31 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 112 / 1e-26 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10040339 [exp] 60 / 9e-11 AT4G30200 49 / 9e-08 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10004179 [exp] 54 / 3e-08 AT4G30200 46 / 3e-06 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091500 [exp] 601 / 0 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 594 / 0 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 180 / 7e-48 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 174 / 8e-46 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.002G111600 [exp] 135 / 2e-33 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF00041 [flax] [poplar] fn3 Fibronectin type III domain
Representative CDS sequence Show only first row Show all	>Lus10025841 pacid=23177680 polypeptide=Lus10025841 locus=Lus10025841.g ID=Lus10025841.BGIv1.0 annot-version=v1.0 ATGGATTTCTCGAATTACTGGAAATTGAGCATGAAAGAGAAGACGAAGCTAGTCTACGAGCTGTCCGATCAACCGGATGCTGCCGAAATGCTCCAGGCGT GGAGTCGGCAGGACATTCTTCAGATCCTGTGCTCCGAGATGGGGAAAGAGAGGAAATACACCGGCCTCACCAAGCTCAAGATTATCGAGCAGCTATTGAG GATCGTTCACGATAAGAAATCCTCCGCCGATGCTGGCGGCGGCGGCGGCGGGGTGAGCCGGAGTCGTCTGCGTCTCCGGTTTCCAAGAAGCAGAGGAAAA TGGATGATTTCCCAACTCGGACTCCTCCTCTTCCTCCTACCCCTACCTTTCCGTCCTCCAATACGTGAGGACCCGCCATTCCAAGGCCCTGCTTGTGGGA TGTCTTGCCATCTTGACTGTGCGTTGAAACATGAGGCTACTGGGATTGGGGAAGATGACGGAGGACGTGAGAAACTTGATTGCAGCTTCCGGTGTGTTGG TTGTCGGAAAGTCAACGATTTGCTAGTGTTCTTGAGAAAGCAACTGATGATAGCAAAGGAAACGAGGCGAGTAGACATCCTTTGCTACCGACTGTCTGTA AGCCGGACACTTCTGAATGGGACAGTGAAGTATCAACAACTTCTTGAGACAGTGGATGAAGCTATAAAGCAGCTTGAAACTGAAGTGGGTCCCATCACTG GTTTGCCCGTGAAGATGGGCAGAGGTATTGTCAACAGGCTTTCGGTTGGCCCAGCGATTCAGAAGCAATGTGCCTCTGTTCTTGAGCCACTGGACAACAT CCTGTCAGCCCTCGTTTGTCCTCCTCCATCACTAGATTCTGCTGCCAATGGAGGAACTTCTTTGCTTGCAGTTGGAGGTTCGAATCTAATGTCTCCAATC ACAGTTAGATTTGAAGATGTAAGTGCAACAGCTATTACATTAGTTTTGAGGTCCGAAGATTCTTCTGCAGATGCTATTAGTGGTTATAGTTTATGGCATC GTAAAGCCACGGATACAGGTTATTCTGCTGAACCAACCTGCAGACTGTTTCCCCCAAATACGAAATACATTGTCACGGGTCTTCAACCAGCTACGGAATA CTCTTTCAAAGTTTCTTCCTTCAACAATAGGGGAGAAGTGGGTAGGCGTGAGTTGCATTATTCGACATGCGACATCAACGATGAAGCCCAGATCTCCCCA GCAGGGGAGAGAAGTCAGAGTCCTGTAACCAACTGTAGCAGTTTTTCTAACCCATCGTCAGTGGAAGATGAAACTAATCATAGTCTGCCAACTGCTGAGC AGATTGTTAACCGAGTTGACAACTATCTTACTTACGGGAAGGACGGTGAGAAACTTATGTCTGTAAACATGGCCGGTGTTGGTGCAACCTGCCCTGGGAT TGGCATTAGAAAAAGTATATCAGATGCTGTTGGTCTATTAGATGAGGAACATGGTGTACCAAATTCTGATGTTGGAAAGCTGGAGACTAGTCATCCAAGC AAGGATTGTCAAATTGTTGAGAAAATGAGCACCGATAAAGGCTCTGACATACCTCTTCTGACTGGCGTGGGCAACTTGGGAGCTACCTTACCCATTACTC CTTGCAAAGAAGAAACAGTGAAGGACGTTCAAGGAAGAAATGCAAGATCGAAACCCAGCTACAAGGATGCAACCGATGCAGCGGACAGAGGACGAGAACC CCAAGATGGCAGCACGTCCAAGTCGAAAAAGAGAAGTGCAGATGAGAAATGCACAGCGATTGGGAGCCCTGATGAGGAGTTTGAGTATTGTGTGAAAATG ATAAGGTGGTTAGAATGCCAAGGGCACATAGAGAAGAACTTTAGGCAGAAATTCCTGACCTGGTACAGCTTGAGAGCAAGCACAGAAGAGATGAGGGTTG TGAAGGCATATGTAGATACATTCATCGAAGATCCATCAGCTCTTGCAGAACAGCTTGTTGATACATTTTCAGAATGCATTTCTTCTAGCAGGAGATCGTC TGGGGTACCAGCTGGGTTTTGCATGAAACTTTGGCATTGA
AA sequence Show only first row Show all	>Lus10025841 pacid=23177680 polypeptide=Lus10025841 locus=Lus10025841.g ID=Lus10025841.BGIv1.0 annot-version=v1.0 MDFSNYWKLSMKEKTKLVYELSDQPDAAEMLQAWSRQDILQILCSEMGKERKYTGLTKLKIIEQLLRIVHDKKSSADAGGGGGGVSRSRLRLRFPRSRGK WMISQLGLLLFLLPLPFRPPIREDPPFQGPACGMSCHLDCALKHEATGIGEDDGGREKLDCSFRCVGCRKVNDLLVFLRKQLMIAKETRRVDILCYRLSV SRTLLNGTVKYQQLLETVDEAIKQLETEVGPITGLPVKMGRGIVNRLSVGPAIQKQCASVLEPLDNILSALVCPPPSLDSAANGGTSLLAVGGSNLMSPI TVRFEDVSATAITLVLRSEDSSADAISGYSLWHRKATDTGYSAEPTCRLFPPNTKYIVTGLQPATEYSFKVSSFNNRGEVGRRELHYSTCDINDEAQISP AGERSQSPVTNCSSFSNPSSVEDETNHSLPTAEQIVNRVDNYLTYGKDGEKLMSVNMAGVGATCPGIGIRKSISDAVGLLDEEHGVPNSDVGKLETSHPS KDCQIVEKMSTDKGSDIPLLTGVGNLGATLPITPCKEETVKDVQGRNARSKPSYKDATDAADRGREPQDGSTSKSKKRSADEKCTAIGSPDEEFEYCVKM IRWLECQGHIEKNFRQKFLTWYSLRASTEEMRVVKAYVDTFIEDPSALAEQLVDTFSECISSSRRSSGVPAGFCMKLWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10025841 [exp]	0	1
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	5.1	0.9347
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	10.8	0.9212
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	14.7	0.9213
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	19.7	0.9212
AT3G53400			unknown protein		Lus10026502 [exp]	19.8	0.9213
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	21.8	0.9095
AT2G28780			unknown protein		Lus10007010 [exp]	22.8	0.8961
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10000469 [exp]	24.7	0.9025
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	28.9	0.9178
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	29.9	0.9163

Compare expression of checked genes

Lus10025841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.