Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62940 724 / 0 ACOS5 acyl-CoA synthetase 5 (.1) AT3G21240 326 / 1e-104 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 320 / 3e-102 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT4G05160 319 / 3e-102 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 302 / 1e-95 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G65060 296 / 3e-93 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20480 292 / 1e-91 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 288 / 5e-90 4CL5 4-coumarate:CoA ligase 5 (.1) AT5G63380 266 / 1e-81 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 256 / 5e-78 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038259 [exp] 956 / 0 AT1G62940 769 / 0.0 acyl-CoA synthetase 5 (.1) Lus10005390 [exp] 341 / 2e-110 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 335 / 4e-108 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10026143 [exp] 332 / 5e-107 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 331 / 8e-107 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10021431 [exp] 300 / 9e-95 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 298 / 3e-94 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 298 / 2e-93 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 295 / 2e-92 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G055700 [exp] 773 / 0 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.001G036900 [exp] 348 / 2e-113 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G172651 [exp] 322 / 1e-105 AT1G62940 324 / 4e-107 acyl-CoA synthetase 5 (.1) Potri.003G188500 [exp] 325 / 9e-105 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 320 / 1e-102 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 313 / 1e-99 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.002G012800 [exp] 305 / 1e-96 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.019G049500 [exp] 303 / 7e-96 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.005G248500 [exp] 303 / 9e-96 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 297 / 8e-94 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10025842 pacid=23177581 polypeptide=Lus10025842 locus=Lus10025842.g ID=Lus10025842.BGIv1.0 annot-version=v1.0 ATGGACAGTGCCAAATATGAAGAGGACGATCAACACATCTTCAGAAGCCAATACCCGGAAATCCCAGTCCCCAAGAACGTGACCCTCCCGGAATTCGTCC TTCAAGATGCCGATCTGTACGCCGACAAGGTAGCATTCGTCGATGCATTCACCGGCAAGTCCTATACATATGCCGACGTTGTTAGGGACACTAGAAGGTT TGCAAAAGCGCTGAGGTCCCTCGGGCTGAGAAAGAAGCATGTGGTGGTCGTTGTGCTCCCTAATGTTGCCGAGTATGGGATTGTTGCGCTCGGAGTAATG GCTGCCGGCGGAGTCTTCTCCGGTGTCAATCCCGCGTCGCATCCTTCTGAGATCAAAAAGCAAGTCGAGGCCGCCGATGCCAAGCTCATTGTCACCAACG ATGTCAACTACGAGAAGGTGAAGGCTCTGCAGCTACCTGTGATCGTCCTGTCAGACACCAAACTGGACGGTCCCATCAACTGGAACGACCTCCTCACAGC CGCCGACCGGGCCACCGACAACGATATCCGCCGCCATGATGCGGTGGAGCAAGACGACATATGCGCCCTCCCATTCTCGTCGGGCACGACGGGGACGTCG AAGGGAGTGATGCTGTCCCACAGGAACATCGTGGCCAATCTCTGCTCATCGCTGTTCAGCGTGGGTCCCGAGCTGATCGGTCAGGTCACCACTCTGGGGC TCATACCTTTCTTCCATATCTACGGGATCACCGGAATATGCTGCGCCACGCTGAGGAACAAGGGCAAAGTGGTGGTTATGGGCAGGTACGATCTCAGGAC TTTTCTCAACGCCCTCATTGCTCACGAGGTCACGTTCGCTCCGATCGTCCCGCCCATCATACTGGCGTTGGTGAAGAACCCTATTGTCGAGGAGTTTGAC ATGGAGAAGCTGAAGCTCGCCGCTGTTATGACTGCCGCCGCTCCTCTGGCGCCGGAGCTGCTCAGGGCGTTTGAGAGTAAGTTCCCCGGTGTTCAAGTCC AGGAGGCGTATGGGTTGACGGAGCACAGTTGCATAACACTATCCCACGGGAATCCATCGAAAGGACAGAGGATCTCAAAGAAGAACTCTGTGGGATTCAT ATTGCCAAACCTGGAGGTGAAGTTCATCGATCCTGAAACAGGGGCATCCCTCCCGGCCAACACTCATGGCGAAATTTGTGTCAGAAGCAAGTGTGTTATG ATGGGTTACTTCAACAATGAAGAGGAGACAGCGAGGACAATTGACAAGGCAGGATGGCTGCACACTGGGGACATTGGTTATATTGATGATGATGGAGATA TCTTCATTGTGGACCGTATCAAAGAACTCATCAAATACAAAGGCTTTCAAGTTGCTCCAGCGGAACTGGAGGCTATTCTGCTATCCCATCCAGCCGTGCA AGATGCAGCAGTTGTGCCGTTGGCGGATGAAGAGGCAGGGGAGGTGCCAGGGGCATGTGTGGTGGTGAAGGGTGAAGGAGGGGAAGAAATAAGTGAGGAA GAGATAATGAAGTTTGTGGCAGGGAATGTGGCTCATTACAAGAGAGTTAGAGTGGTTCAGTTTGTGGATAGCATCCCCAAATCCCCTTCTGGCAAAATCA TGCGCAGGTTTATTAAGGACCAGATGATCCAGAGGATTCGTTCTGCTGCATCCAACAACTCATCAACTCCTCTTCCTCTCCACAACCACTCTCACAAATA A
AA sequence Show only first row Show all	>Lus10025842 pacid=23177581 polypeptide=Lus10025842 locus=Lus10025842.g ID=Lus10025842.BGIv1.0 annot-version=v1.0 MDSAKYEEDDQHIFRSQYPEIPVPKNVTLPEFVLQDADLYADKVAFVDAFTGKSYTYADVVRDTRRFAKALRSLGLRKKHVVVVVLPNVAEYGIVALGVM AAGGVFSGVNPASHPSEIKKQVEAADAKLIVTNDVNYEKVKALQLPVIVLSDTKLDGPINWNDLLTAADRATDNDIRRHDAVEQDDICALPFSSGTTGTS KGVMLSHRNIVANLCSSLFSVGPELIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRYDLRTFLNALIAHEVTFAPIVPPIILALVKNPIVEEFD MEKLKLAAVMTAAAPLAPELLRAFESKFPGVQVQEAYGLTEHSCITLSHGNPSKGQRISKKNSVGFILPNLEVKFIDPETGASLPANTHGEICVRSKCVM MGYFNNEEETARTIDKAGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLSHPAVQDAAVVPLADEEAGEVPGACVVVKGEGGEEISEE EIMKFVAGNVAHYKRVRVVQFVDSIPKSPSGKIMRRFIKDQMIQRIRSAASNNSSTPLPLHNHSHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	0	1
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	4.7	0.9078
					Lus10008816 [exp]	5.1	0.9444
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	5.5	0.9308
					Lus10002266 [exp]	6.7	0.9339
					Lus10010481 [exp]	7.2	0.9379
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	12.0	0.9311
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	13.6	0.9308
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	14.7	0.8600
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	15.0	0.9130
AT1G15260			unknown protein		Lus10037547 [exp]	15.7	0.9141

Compare expression of checked genes

Lus10025842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.