Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50340 551 / 0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038258 [exp] 1157 / 0 AT5G50340 615 / 0.0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191200 [exp] 632 / 0 AT5G50340 645 / 0.0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06745 [flax] [poplar] ATPase KaiC CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain
Representative CDS sequence Show only first row Show all	>Lus10025843 pacid=23177675 polypeptide=Lus10025843 locus=Lus10025843.g ID=Lus10025843.BGIv1.0 annot-version=v1.0 ATGAAATTTGTTAGACCACTCTACAGTCATCGAATGAACTGCTTGAGATCATATTTCTCTTCCAGAGGCATTCTCCCCAAGAGCCCAAGCAAATCTCCCA CCTCTTTTCCTTTCATTTCAACCCAGTGCTCGCTTCCATTTCCGTTCCTTCATTTTCGCTTCTCTACCAATCGCCTTTCAGCTGAAGCCTCTCCTTTCGC ATTTGATTCCTCTGAACGAGACCGTGGTAGTCGTAATGCTTCACGTGGCTCTCAGGTACGTAGGGTTGTCGATCCAGCCAGAGGTGGGTTTGAGATGAGA AAGAGCCCACTTGGCAGAAACAACCAGGAACCGGAATCTGGCTTTTCCAGTTTTCTTTCAGAAATGGAGGAGATGGAGAGAAATAGGACATATGGAGGTG CCAAGGGAGGTAATTCGGGCGATAGCTTTGATGAAAAAACGTATGAAGACGATGATGTTAATGGCCCAAACTATGAGAGTTCTGTCAATATAGATTGTAA ACCAGATGGTTTGTCGAGCTCAGTTGATGAGCAGCAGGAGAATCGAAGTGATAGCGAGAATAAGGAAAGTCCGAGTACGAAAGATAAGTCGAGGATGGGG CTTCCTGTATATATTGATGACAGTGGGGGCGTTGAGAATGTGAAAAAATATGGAAATGTAAAGAAGGTGGGTTCTGCAAAAGGAGTGAAGCCAGGAATAG GATATATGGTGACAAATAATAAGAAGGAGAAGACCAAAACTAGTTATGTTTGTGAGAACTGTGGGTATACAGACGGGCAATGGTGGGGAACTTGTCGCTC TTGTAAGAAGTATGGGACGATGAAGAAGTTTACTGAAGTGAGTGGTGGAAGTGGGGAGAAAGTTAGTGGCACGGTGACCTCTGAGAATATTGTGCAGTCT TGGCTACCGCAGCAAGCTGCAGAGGTTAACCCAGTAAGTTTGGCTGACGTCAACAGGGAGGTGAATCATTTGGAATGGAGAATTCCCCTGCGTGGGGCTT TTGGAGATGAAGTAGCTAGAGTTCTTGGTGGTGGTATTGTACCAGGTTCTCTGGTCTTGGTTGGTGGAGATCCTGGTGTTGGAAAGAGTACATTGATGTT ACAGCTTGCTGCAATAATAGCTGAAGGACAAGGTCTTGGGGAAACAGCTCCGGTTGTTTATGTCTCCGGGGAAGAGAGTGTTCAGCAAATTGCGAACAGA GCTGTTCGTCTGGGAATAGGAATAGAAGACCTTTACTTGTACTCTAGCACTGATGTTGCGGACATAATTGTAAAAATTCAGAACATATCTCCACGTGCTT TAGTTGTTGATTCAATTCAAACAGTTTACCTTGACGGCTATGGGAGTCCTGGAGGAATACAACAGATCGGACATGTGAACAAGTCTGGGGACATTGCCGG GCCTCGTGTCCTGGAGCATATTGTTGATGTTGTTTTATATTTGGAAGGGGAGAAGTCCTTGTCTCATCGTTTGCTCCGGCCAGTGAAGAACCGGTTTGGG TCCACTGATGAGCTGGGCGTATTTGAAATGGTTCAATCGGGTTTGAAAGTTGTTTCCAATCCAAGTGAGATATTCTTAAGTCAGCAGCACTTGGAATCTG ATGTTGTGGCTGGAGTAGCTGTGACTGTAATGATGGATGGGTGTCGAAGTTTCCTTGTTGAGATTCAGGCATTGTGCGTTGCTAATTCGTTAGTTTCAAG GAAGCATGCTACTACTGGAATTAAACTGGGCAGGGCTGAAATGATTATTGCGATCATATTCCTCAATGTTCTTGGTGGGGCAGAGTTGACTGAAACGGCT GGTGATCTTGCAATAGCAGTTGCAATTTGCACCAGTTTCTTGGAGTGTCCGATTCCCAACAACATTGCATTTATTGGAGAAATTGGTCTTGGTGGTGAGC TGCGTACAGTACCAAGAATGGAGAAGCGAGTACACACAGTCGCAAAGTTAGGATACCAGATGTGCATTGTTCCGGCTGCTGCCAAAAAAGCTCTGGAAAA TTTTAGCTACGAGGGGCTGCAAGTGGTGGGATGCGAGAATCTGAAAGAAGTCATCAACAGAGTCTTCAGACCAGGTGGCAGATGA
AA sequence Show only first row Show all	>Lus10025843 pacid=23177675 polypeptide=Lus10025843 locus=Lus10025843.g ID=Lus10025843.BGIv1.0 annot-version=v1.0 MKFVRPLYSHRMNCLRSYFSSRGILPKSPSKSPTSFPFISTQCSLPFPFLHFRFSTNRLSAEASPFAFDSSERDRGSRNASRGSQVRRVVDPARGGFEMR KSPLGRNNQEPESGFSSFLSEMEEMERNRTYGGAKGGNSGDSFDEKTYEDDDVNGPNYESSVNIDCKPDGLSSSVDEQQENRSDSENKESPSTKDKSRMG LPVYIDDSGGVENVKKYGNVKKVGSAKGVKPGIGYMVTNNKKEKTKTSYVCENCGYTDGQWWGTCRSCKKYGTMKKFTEVSGGSGEKVSGTVTSENIVQS WLPQQAAEVNPVSLADVNREVNHLEWRIPLRGAFGDEVARVLGGGIVPGSLVLVGGDPGVGKSTLMLQLAAIIAEGQGLGETAPVVYVSGEESVQQIANR AVRLGIGIEDLYLYSSTDVADIIVKIQNISPRALVVDSIQTVYLDGYGSPGGIQQIGHVNKSGDIAGPRVLEHIVDVVLYLEGEKSLSHRLLRPVKNRFG STDELGVFEMVQSGLKVVSNPSEIFLSQQHLESDVVAGVAVTVMMDGCRSFLVEIQALCVANSLVSRKHATTGIKLGRAEMIIAIIFLNVLGGAELTETA GDLAIAVAICTSFLECPIPNNIAFIGEIGLGGELRTVPRMEKRVHTVAKLGYQMCIVPAAAKKALENFSYEGLQVVGCENLKEVINRVFRPGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	0	1
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	1.0	0.9036
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	2.0	0.8686
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	2.8	0.8233
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	3.5	0.8418
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	3.5	0.8167
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	5.9	0.7800
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	6.9	0.8408
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	7.4	0.8169
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	7.7	0.8180
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	8.1	0.7966

Compare expression of checked genes

Lus10025843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.