Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24560 647 / 0 unknown protein AT3G49055 80 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038257 [exp] 1110 / 0 AT1G24560 736 / 0.0 unknown protein Lus10013022 [exp] 588 / 0 AT1G24560 624 / 0.0 unknown protein Lus10029143 [exp] 584 / 0 AT1G24560 613 / 0.0 unknown protein Lus10027489 [exp] 103 / 3e-23 AT3G49055 244 / 3e-75 unknown protein Lus10039244 [exp] 59 / 3e-10 AT3G49055 89 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183800 [exp] 799 / 0 AT1G24560 691 / 0.0 unknown protein Potri.010G049400 [exp] 770 / 0 AT1G24560 642 / 0.0 unknown protein Potri.008G184600 [exp] 367 / 2e-122 AT1G24560 302 / 2e-97 unknown protein Potri.015G146100 [exp] 124 / 1e-29 AT3G49055 191 / 1e-54 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11559 [flax] [poplar] ADIP Afadin- and alpha -actinin-Binding
Representative CDS sequence Show only first row Show all	>Lus10025844 pacid=23177505 polypeptide=Lus10025844 locus=Lus10025844.g ID=Lus10025844.BGIv1.0 annot-version=v1.0 ATGTCGGCGGGGGGGGGGGGGGGGGGTACCGCCGACGTGGTGCTAAGCGACGTGGAGGAGGATGAAGATCCGAGTTCGATCGTGATTTCGAGTCCCAGCC AAGAAGATGTCTCATTAGAGAGGTTTTGCGAGCTTGTCAGTGAGCTAGAGCGGGAGCGAGTGCTTCGCCGGGCTGCCGAGGATTCGAAATCTGAGTTACA GGACAAGTTCCTCCGGTTGAAGTCTCTAGCGCATGAGGCTATCAAGAAGCGAGATGAATGTGGGAAGCAACGGGATCAAGCTGTTAAGGAGAAGGAGGAT GCTCTGCTGGCTAACGTTAAGATTACGGATGAATTGACTCAACTGAAGAGGTTGCAAGATGAGGTTATAAAGCAGAGAGACGAGGTTACTCGGCAACTTG ATGAAGCTGTTAAGACGCGGGATGATTTGCAATCAGAGATGGATAATTCCAGGCATATGCTGGTGAGTGGAATTGAAAAGATTTCCGGCAAAGTTAGTAA TTTCAAGAATTTTGCCGCAGCTGGATTGCCCAGATCTCAGAAATACTCTGGATTTCCTGCAATTGCTTACGGAGTAATTAAGAGGACCAATGAGATAGTT GAGGAGCTTGTTAGGCAGATTGATGCCACCGCAAAGTCCAGAAACGAAGCGAGAGAACAGATGGAACAGAGGAACTATGAGATAGCCATTGAAGTGTCTG AACTTGAAGCTTCTATTAGTAGATTGAAAGAAGAAGTGGAGAAGAAGAGTTCATCGGTTGAGAGTTTAGAGAAAGCCGTTGCAGAAAACCATGGAAAGTT GGCTGAAGTTGAGAGAGAGATGGTTGAGAAGACAGAGACGGGACAGAAGGAAGTTACAGAAATGAAGCTTTTAGTTAGTGAGTACGATGAGAAACTGAGG AAAGTGGAAATGGAGAGGGAGTCTTTGAGGCCTTTGTTGGTTGATCAATTGAATTTGATTGCCCGAGTCCATGATCAGCTTTATAGTGTTATTAAGATAG TTAATTCAAATCATTCTGATTCAGACTTGTCCGAGTCTTTGTTTCTCCCACAGCAGACAGATATGGAGGAGAATGTTCGTGCTTCACTTGCAGGCATGGA ATCAATTAACCAGTTAGCTAGAATAGTTGCAGAGAAAACAAAGGACTGGACAGATGAGAAAATGCATGAAGTGAAGAAGTTGAATGAAACTGTCGACCGA TCTAATAAAGAGAAAGAACAAATTAGCTCTCTACTCAGGAGTGCTTTATCCAAAAGGATGACTTCAGACTCGCCTTCCAGGACAAATGAATTGTTTCAAG CTGCTGAGAATGGTTTGCGAGATTCTGGAATAGATTTCAAATTTAATAAGGTCCTTGCAGCTTCTCATGAAACTAATGGTCCGCAGAATGCAGATGAGGA TGAAATATACAATCTGGCTGGAGCGCTGGAGAATATTGTCAAGGCATCCCAGCTTGAGATAATTGGATTGCAGCACACTGTGGAGGGATTAAGGGCAGAG TCAAGTTTACTGAAGGAGCATATAGAGGGCCAAGCCAAGGAATTGAACCACAGACTGCAGAAAATTGAGGAGCTTGAGGAGAAAGAGAGAGTGGCAAATG AAAGCGTTGAAGGGCTCATGATGGACATTGCTGCTGCTGAAGAAGAAATAACAAGGTGGAAAGTCGCAGCAGAGGATGAGGCTGCTGCAGGGAGAGCTGT TGAACAAGAGGTCATGGCTCAGTTGTCTGCATTAAAGCAAGAGCTTGAAGAGACAAGACAGTCTATGTCAGAATCGGAGAAGAAGTTGAAGTTTAAGGAG GAGACTGCAGCTGCTGCTATGGCCGCAAGAGAGGCTGCTGAGAAGTCATTGAGATTAGCTGACACAAGAGCTTCGAGGCTCAGAGACAGGGTAGAGGAGC TCACCCGTCAAATTGAAGAGTTTGAGACCCGAGAAGACACTAGAGGAAGAAATAGACCTAGATATGCATGCTGGCCATGGCAGTGGCTTGGGCTCGACAT TGTGGGCACTAGCAGACCTGAAATACAGCAACAAACTTCAAATGAAATGGAGCTGTCAGAGCCCTTCTTATGA
AA sequence Show only first row Show all	>Lus10025844 pacid=23177505 polypeptide=Lus10025844 locus=Lus10025844.g ID=Lus10025844.BGIv1.0 annot-version=v1.0 MSAGGGGGGTADVVLSDVEEDEDPSSIVISSPSQEDVSLERFCELVSELERERVLRRAAEDSKSELQDKFLRLKSLAHEAIKKRDECGKQRDQAVKEKED ALLANVKITDELTQLKRLQDEVIKQRDEVTRQLDEAVKTRDDLQSEMDNSRHMLVSGIEKISGKVSNFKNFAAAGLPRSQKYSGFPAIAYGVIKRTNEIV EELVRQIDATAKSRNEAREQMEQRNYEIAIEVSELEASISRLKEEVEKKSSSVESLEKAVAENHGKLAEVEREMVEKTETGQKEVTEMKLLVSEYDEKLR KVEMERESLRPLLVDQLNLIARVHDQLYSVIKIVNSNHSDSDLSESLFLPQQTDMEENVRASLAGMESINQLARIVAEKTKDWTDEKMHEVKKLNETVDR SNKEKEQISSLLRSALSKRMTSDSPSRTNELFQAAENGLRDSGIDFKFNKVLAASHETNGPQNADEDEIYNLAGALENIVKASQLEIIGLQHTVEGLRAE SSLLKEHIEGQAKELNHRLQKIEELEEKERVANESVEGLMMDIAAAEEEITRWKVAAEDEAAAGRAVEQEVMAQLSALKQELEETRQSMSESEKKLKFKE ETAAAAMAAREAAEKSLRLADTRASRLRDRVEELTRQIEEFETREDTRGRNRPRYACWPWQWLGLDIVGTSRPEIQQQTSNEMELSEPFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24560			unknown protein		Lus10025844 [exp]	0	1
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	4.9	0.7169
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	7.3	0.7216
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10033714 [exp]	8.5	0.6699
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	13.9	0.7425
AT1G77280			Protein kinase protein with ad...		Lus10000968 [exp]	18.3	0.7373
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	18.7	0.7030
AT2G28780			unknown protein		Lus10005903 [exp]	19.1	0.7136
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	21.8	0.6984
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	22.4	0.6907
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	24.1	0.7031

Compare expression of checked genes

Lus10025844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.