Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17420 436 / 2e-154 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 424 / 7e-150 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT2G41680 277 / 3e-90 NTRC NADPH-dependent thioredoxin reductase C (.1) AT3G09940 40 / 0.0009 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038256 [exp] 470 / 7e-170 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10006853 [exp] 468 / 1e-160 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10018051 [exp] 269 / 9e-88 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10042048 [exp] 269 / 1e-86 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10037596 [exp] 255 / 1e-86 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10019550 [exp] 233 / 1e-77 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456800 [exp] 457 / 3e-163 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 439 / 5e-156 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.006G049100 [exp] 272 / 2e-88 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10025845 pacid=23177565 polypeptide=Lus10025845 locus=Lus10025845.g ID=Lus10025845.BGIv1.0 annot-version=v1.0 ATGCCCAGGGATACCCCCCGCGGGGGCAAGTCCACCCCCCCCCCCGACGTCGAGAACTTCCCCGGCTTCCCCGACGGGATCATGGGCGGAGACCTCATGG ATCGTTGCCGTGCTCAATCCCTCCGATTCGGGACCCAGGTCTTCACCGAAACCGTGAGCAAGGTCGATTTCTCTTCCAGTCCATTCAAGGTTTTCACCGA TTCGAAGACCGTCCTCGCCGATACCGTCGTGGTTTCCACCGGCGCAGTCGCCAAGCGGCTTCAGTTCTCCGGGTCGGAGACTTTCTGGAACCGAGGGATA TCCGCCTGCGCGGTCTGCGACGGCGCCGCCCCAATTTTCAGGAACAAGCCGCTGGCGGTGATCGGGGGAGGGGATTCAGCGATGGAGGAAGCGAATTTCT TGACCAAGTATGGTAGCAAAGTGTACATCATCCACAGGAGGGATACTTTCAGAGCGTCCAAGATTATGCAGAATAGGGCCCTAACGAACCCTAAGATAGA GGTGGTGTGGAATTCGGTGGCAGAGGAGGCTTATGGAGAGAATAAGCTTGGTGGTTTGAAGGTGAGGAATTTGGTCACGGATGAAGTCTCTGATTTGAAG GTTTCTGGACTGTTCTTTGCGATTGGGCATGAACCAGCTACGAAGTTCTTGGATGGACAGCTGGAACTAGACTCTGATGGGTATGTAGTGACCAAGCCTG GAACCACCCAGACTAGCGTTGTTGGGGTGTTTGCTGCTGGTGATGTTCAAGACAAGAAATACAGGCAGGCCATCACTGCAGCTGGCACTGGTTTGTTTCT CTTCATCTTGTCTAATTGGACTTCTAGCTTTGTGGAGCTTCTATAG
AA sequence Show only first row Show all	>Lus10025845 pacid=23177565 polypeptide=Lus10025845 locus=Lus10025845.g ID=Lus10025845.BGIv1.0 annot-version=v1.0 MPRDTPRGGKSTPPPDVENFPGFPDGIMGGDLMDRCRAQSLRFGTQVFTETVSKVDFSSSPFKVFTDSKTVLADTVVVSTGAVAKRLQFSGSETFWNRGI SACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDTFRASKIMQNRALTNPKIEVVWNSVAEEAYGENKLGGLKVRNLVTDEVSDLK VSGLFFAIGHEPATKFLDGQLELDSDGYVVTKPGTTQTSVVGVFAAGDVQDKKYRQAITAAGTGLFLFILSNWTSSFVELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	0	1
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	3.2	0.7899
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	5.5	0.7690
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	9.8	0.7619
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	10.2	0.7649
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	12.4	0.7381
AT4G08330			unknown protein		Lus10018170 [exp]	12.7	0.7029
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	15.8	0.7428
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	16.3	0.6745
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	17.0	0.7442
AT2G43250			unknown protein		Lus10040469 [exp]	17.1	0.7468

Compare expression of checked genes

Lus10025845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.