Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52080 224 / 5e-65 AR791 actin binding protein family (.1) AT3G25690 134 / 2e-32 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038254 [exp] 952 / 0 AT1G52080 333 / 2e-106 actin binding protein family (.1) Lus10034382 [exp] 124 / 3e-29 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 124 / 3e-29 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10023883 [exp] 43 / 0.0005 AT2G36650 103 / 1e-24 unknown protein Lus10014389 [exp] 42 / 0.001 AT2G36650 95 / 5e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047200 [exp] 399 / 4e-131 AT1G52080 348 / 3e-112 actin binding protein family (.1) Potri.001G191300 [exp] 391 / 7e-128 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.010G130800 [exp] 117 / 6e-27 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 62 / 8e-10 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 62 / 1e-09 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.005G098400 [exp] 57 / 3e-08 AT2G36650 142 / 4e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025846 pacid=23177646 polypeptide=Lus10025846 locus=Lus10025846.g ID=Lus10025846.BGIv1.0 annot-version=v1.0 ATGGGAGGGAGAGACAGGAAGGATATAAGACCCCTTCTCCTAAGATTTGGACTGGCTGTTTCTGTCTCCTTTGCTGGATTTCTTGCTTCTCGGATTGCAG CTAACAGAATCCATATGGCTAAGCAGCCTCCTCCACCCCTAGATCATGGAAGTAGTGAAGCTGAAGTGAGAGCAGGGGATGATGTTCATGCCATGAAAAG AACTACTGGTTCTGGTAGCATGGGTTTCGAAGGACAAGAGGACGTTTGCAGGGTGAATTTTTCTCCAAGCTGCAGGCTGACTGAAGATAAAGACGGGTAC CTATTGCCAGAATTCAATAATCTAATCAACGATTTCAGCTTCAGTTCCGTGAACAAGGGGGCTTCTCCTAAGGGAGACCCGGTGATGATGCTGAGGGTAG ATGCTGATACACCTAAGGCATTTAGAAGCATCGAGGAAGAGGACGAGGACGAGGAGGAAGATGACAACTATCATGAAATTGAGATCAGTCATTTGAAGAA CAAGGTGAGACTGCTCGAAGAGAGGGAGAGGAACCTTGAGCTACAGTTGCTGGAGTTGTATGGCCTTAAAGAGCAAGAAACTGCTGTGATGGAGCTTCAG AACCGTGTCAAGATAAACAGCATGGAAACTAAACTTCTCACCCTAAAAATGGAGACTTTGCAAGCAGAAAATCAGAGGCTTCAGGCTCAAGCTGCTGACC ACATGAAAACCTTGTCCGAGCTTGATGCTGCAAGAGCCAAAATCAAACTGCTGAAGAAAAAGTTGAGGTCTCAAACTGAACAGAATAAGGAACAGATCTT GATCCTCAAGAAGAAAGTTTCCAAGTTGCAAGAACAAGAAATCGATGCTGCTTCAAGCGATCCACAATTGCAGAGACTGAAGGATTTGGAGGTACAAGCA CAAGAGTTGAGAAAGTCTAACTCGAACTTGCAGGAGGAGAATTCCGATCTGGCTCATCGGCTTGATGCCACACAACTCCTTGCAAATTCTGTTCTTGAAA ATCCTGAGATGGAGGAACTGAGGCGACTAAGCAACCGGCTAAGTGAGGAAAATATGCATTTGACGAAGGAAGTGGAGAGGGTGAAAGCAGACAGATGTTC AGATGTGGAAGAGCTAGTTTATCTTAGATGGATCAACGCCTGCCTACGGTACGAGTTGCGCAATTTCCAGGCACCTAACGGGAAAACAGCAGCAAGAGAC CTGAGCAAATCACTGAGCCCCGAATCCGAGGAGAAGGCGAAAAAGCTGATCCTTCAATACGCGAATGCAGACGGAATGGGGGAAAAGGGAATGAGATTGG TTGATTTGGAGACTGATCAATGGTTGTCTTCCCAGGCATCATGCATCACAGACTCCACAAACTTTGATGACAGTTCCTCTGTATCATCATCAAAGCCCCC CAACAGTCCCAGAAAGCTCAAGATCTTTAAGAAACTTAGGAGGCTATTACGAGGAAAAGACGATCACCGATCATCACCATTGGAGAAAACAGCAGGAGGG ATGGAAGATTCTGATTATCCTAGCAGCATCTCAACCGGGACGGATGCAGGAAGTGATACACAATCCTTCAGAGGTCAAACACCGTTGACTTCCTACAGAT ACTCAATCGACAGTCATAGAGTGATCATCCCCGGGATGTATGATGCTGCCTCTGCTGTCAAGGATATTGACAGCCTGCGTGTAACGAGCGATCTGGGTTC CTCGGATGTTCTCAGAAGATTTTCGTCACCGGGTGCAGAATCAGGTAGAGATTTCACATCTGAAAGCCATCCAAGTGAAGACCTATACCCTACTGGGAAA TCTGACTTGGTGAGGTTTGCTGGGGTATTGAAGGATTCCAGTGGAAATAATATAACAGAGCCATATCACAGAAAAGGGAAAAGCAGTGTCTTCTAA
AA sequence Show only first row Show all	>Lus10025846 pacid=23177646 polypeptide=Lus10025846 locus=Lus10025846.g ID=Lus10025846.BGIv1.0 annot-version=v1.0 MGGRDRKDIRPLLLRFGLAVSVSFAGFLASRIAANRIHMAKQPPPPLDHGSSEAEVRAGDDVHAMKRTTGSGSMGFEGQEDVCRVNFSPSCRLTEDKDGY LLPEFNNLINDFSFSSVNKGASPKGDPVMMLRVDADTPKAFRSIEEEDEDEEEDDNYHEIEISHLKNKVRLLEERERNLELQLLELYGLKEQETAVMELQ NRVKINSMETKLLTLKMETLQAENQRLQAQAADHMKTLSELDAARAKIKLLKKKLRSQTEQNKEQILILKKKVSKLQEQEIDAASSDPQLQRLKDLEVQA QELRKSNSNLQEENSDLAHRLDATQLLANSVLENPEMEELRRLSNRLSEENMHLTKEVERVKADRCSDVEELVYLRWINACLRYELRNFQAPNGKTAARD LSKSLSPESEEKAKKLILQYANADGMGEKGMRLVDLETDQWLSSQASCITDSTNFDDSSSVSSSKPPNSPRKLKIFKKLRRLLRGKDDHRSSPLEKTAGG MEDSDYPSSISTGTDAGSDTQSFRGQTPLTSYRYSIDSHRVIIPGMYDAASAVKDIDSLRVTSDLGSSDVLRRFSSPGAESGRDFTSESHPSEDLYPTGK SDLVRFAGVLKDSSGNNITEPYHRKGKSSVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	3.0	0.9036
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	3.3	0.8908
AT4G21570			Protein of unknown function (D...		Lus10018447 [exp]	4.2	0.8933
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	4.9	0.9169
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	6.2	0.9256
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	8.7	0.8819
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	8.8	0.8481
					Lus10008052 [exp]	9.8	0.8937
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	12.0	0.8854
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	15.6	0.8699

Compare expression of checked genes

Lus10025846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.