Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15840 375 / 6e-132 PIFI post-illumination chlorophyll fluorescence increase (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038253 [exp] 510 / 0 AT3G15840 380 / 4e-134 post-illumination chlorophyll fluorescence increase (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204300 [exp] 377 / 1e-132 AT3G15840 364 / 4e-128 post-illumination chlorophyll fluorescence increase (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025847 pacid=23177526 polypeptide=Lus10025847 locus=Lus10025847.g ID=Lus10025847.BGIv1.0 annot-version=v1.0 ATGGCAGCCATTGTTGCATCTCCACCCCAATCTTTTACCTCTACCAAGTTCACTATTCTTCCAAATCTGCCCGCCTCAAACACCCTTGGCAATGGTCTTA TGGGGGCTTCAATGACGTCATGGAGTTCAGCATCAAAGAAAAGCACAGCAATGAGAACTTCAGGGAAAGTGGCTGCCTCAGCTACTGCAATTGCCACAAC AACACCCGTGGGCGTGGAGGAGGAAGTGAAAGAATATGCACTTCCATCATGGGCACAGTTTGAGATTGGGAAGGCACCCGTTTACTGGAAAACCACCAAT GGTCTTCCTCCATCTTCTGGGGAAACACTAAAGCTTTTCTACAATCCAGCTGCCAAGGAACTCACTCCAAATGAAGAATTTGGGGTTGCTTTTAATGGTG GTTTCAATCAACCCATTATGTGTGGTGGAGAGCCAAGGGCAATGCTTGAGAAAGTTAGAGGAAAAGCTGATGCCCCTCTGTATTCCATACAGATATGCAT TCCTAAGCATGCTGTGAACTTGATTTTCTCATTTACCAATGGAGTTGATTGGGATGGTCCATACAGACTGCAATTCCAAGTTCCTAAAGCTTGGAGAAAC AAACCCATGGAGTTCTTCAACGAGGGTCTAGGACAAGAGTTGAGTCAAGAAGGTGCATGTGACAGAGCAATCTTTCCAGACACAGAGGTCATTGCCACAA GATGTGCCATGATTGGTAACTTGACAACTGAAGGAGGCGATCGGTGCAATCTTGATCTAGTTCCAGGATGCATGGATACTAGCTCACATTTGTTCAACCC ACTTGCGAATGTAGATGATGGATCTTGCGAGATCGATCTAGATACGGGGGATGAGTAG
AA sequence Show only first row Show all	>Lus10025847 pacid=23177526 polypeptide=Lus10025847 locus=Lus10025847.g ID=Lus10025847.BGIv1.0 annot-version=v1.0 MAAIVASPPQSFTSTKFTILPNLPASNTLGNGLMGASMTSWSSASKKSTAMRTSGKVAASATAIATTTPVGVEEEVKEYALPSWAQFEIGKAPVYWKTTN GLPPSSGETLKLFYNPAAKELTPNEEFGVAFNGGFNQPIMCGGEPRAMLEKVRGKADAPLYSIQICIPKHAVNLIFSFTNGVDWDGPYRLQFQVPKAWRN KPMEFFNEGLGQELSQEGACDRAIFPDTEVIATRCAMIGNLTTEGGDRCNLDLVPGCMDTSSHLFNPLANVDDGSCEIDLDTGDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	0	1
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	1.0	0.9788
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	1.7	0.9645
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10040314 [exp]	2.0	0.9614
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	2.4	0.9663
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	4.2	0.9140
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	4.6	0.9120
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	5.5	0.9571
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	5.7	0.9297
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	6.5	0.9197
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10025959 [exp]	6.9	0.8913

Compare expression of checked genes

Lus10025847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.